Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00628 ATGTCTTGTTTCGTGGCAGTTTCTAATTCCCCCGTCTTCTCTCTCTTCAACAACAACACCAATAACAATAACTCTTCTTCCATGGCAGAACCTCTCATGCTTTCTCTTCCCATTCCCTCGACCACACCCTCTTGCTCCTCTCCTCCTTCCTCTCCCCTGTTGAAGCGGAGAAGACCTGCAAAACTCGACATTCCCGTCGCTTCTCTCGCACTCACGCTCTCGACGGCGCCGGCGCCGTCTCCGGCGATGGACTCGGTCGTCGAGGTCGACGGAAGCGGGTTTTCTGTGTTCTGCAGACGAGGAAGGAGGGCCCACATGGAGGACCGTTACTCCGCTGCCGTTGATCTTCGCGGTGAACCCAAGCAGGCTTTCTTCGGCATATTCGATGGGCATGGGGGCACAAAAGCTTCGGAATTCGCTGCACATAACTTGGAGAAGAATGTGATGGATGAGGTGGTTAGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAAAATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTCATGGTGGCTCTTGCTGTGTGACGGCATTGATATGGAATGGCAACCTTGTTGTGTCTAACGTTGGGGATTGTCGTGCTGTGATTAGCAGAGGCGGGGTGGCAGAAGCCCTCACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTGTGGAGGATCCAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGATAGGAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCTGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTGGTCCTTTTTGTGTAGGTAACAACAGACAACAACCTTTGCAGGCTTGCAAGAAGCTCGTAGATTTATCTGTGTCGCGGGGTTCTGTGGATGATATAAGTGTTATGATCATCAAGTTGCAAAACTATGTTTGA 1047 0.4928 MSCFVAVSNSPVFSLFNNNTNNNNSSSMAEPLMLSLPIPSTTPSCSSPPSSPLLKRRRPAKLDIPVASLALTLSTAPAPSPAMDSVVEVDGSGFSVFCRRGRRAHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVMDEVVRRDESDIEEAVKNGYLNTDSEFLKEDLHGGSCCVTALIWNGNLVVSNVGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPLHDLLILASDGLWEKVSNQEAVDIAGPFCVGNNRQQPLQACKKLVDLSVSRGSVDDISVMIIKLQNYV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00628 348 CDD PP2Cc 93 344 IPR001932 -
Vian6g00628 348 Gene3D - 93 347 IPR036457 -
Vian6g00628 348 PANTHER PROTEIN PHOSPHATASE 2C 55 343 IPR015655 GO:0004722|GO:0006470
Vian6g00628 348 Pfam Protein phosphatase 2C 94 337 IPR001932 -
Vian6g00628 348 ProSiteProfiles PPM-type phosphatase domain profile. 93 344 IPR001932 -
Vian6g00628 348 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Vian6g00628 348 SUPERFAMILY PP2C-like 93 346 IPR036457 -
Vian6g00628 348 SMART PP2C_4 83 342 IPR001932 -
Vian6g00628 348 FunFam probable protein phosphatase 2C 25 86 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00628 Vian-Chr6 22903506 22905635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00628 1 344 PP2C-type Phosphatase Gene Family AT1G07160 58.466 7.95e-142 405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00628 6 22903506 22905635 Vian6g00628 6 22903506 22905635 ECH
Vian6g00628 6 22903506 22905635 Vian7g01924 7 30806411 30808311 ECH
Vian6g00628 6 22903506 22905635 Vian7g01924 7 30806411 30808311 PCT