Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00619 ATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGTGCTGAGTTTTTTAACCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCAATCTGTACCTGAGAGAAGGGTGTTGGTGTCCTTGGAGAGAATTCTTAGTAACTGGTCTGCGGAGCCTGTCACTGTGACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATTCAAGATGGCCGTGATCCCACTTGTCCGGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAACCTAATATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTATCGATTATCAAATCAAATCTTCAGTGCAGTCTCTTAATGAGGAACCCTTGTCTGTTGATCAAGTTGAGCGTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGCAGATACATAATCAGAAATGCTGGTGTTGTGCAGTTGATAGTAACACTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAAGCAAAGCTCTAACGACTTTACTTAGTATGGCCAAGGATGAAGAAAGCAAGAAAATAATGCTGGAACGGGGTATCACTAGATTGGCCGTACATAGTCTTATTGGGAGCTCTACGAAGGAGAGAGAATATGCTACCAAGTTATTACTGGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATAGCATCAGAAAAGGGTGCTTTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCGTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGCTAATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACGTGATGGTTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACTTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCCGAGTATTTGTTGAACTTCTGTTTCATCAAGAAGGAAGGGGACCGAGTCTGCAAGCATTGTATAATTTGTCAGGATTGGATGGCAATGCAACTATCCTTATTGAGTCTTCAGTTCTTCCATCTCTTATAGAAGTTTTATTTCATACTGAGGATCCATCTCATGAGCTGAAGTCATTAGCAGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGGATGGAAACCCAATGCATTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTGAACTGCTTGCCTTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATTATCTCCTCAAGCATCAGAGTTAGTAGCAAGCCATATCACGTCTAAGGGTGGCTTTGGAACGATTATACCATTTCTGGAACATCTAGAAGTTGAACATAGAGTGTTTGCTTTTAAGCTTACAAGGCTACTATCTGAATGGTTTAGTCAATACATTGCAAATGAGTTGAGACTTTCAAACAAGCTTACTATACTCAAAGAAAAACTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATATTTCCCTCTCAGAAGATGAAATACGGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTGTTACTCTCAAGAATCAGCTGCGTGTTTCCAATGCAAGGTCTTCTCAGACTGCAGCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACTAGGAACCTTGATCAAGAAACTCTTAATATAATTAGAGAAAATCACCTTATGGCCATTTTCTGCGAGCAGCTAGATTATAGTTCAAAACCAAAGGTAAAACGACTAGCTGCCATCGGATTGAAAAACTTGTCTGAATTTGGAAGGTCAGATACTGCTAGGGATTCTAAACCACCATCTTCCAGTGGATTCTGTTCCTCCCTTGTGCTTGTGTGCGGGAGAGCCTCTAGTCAACCTTCCACCTGTCCAATTCACAACCGTCCGTGCCATGAAGATAGTCAATTGTGCCTACTCAAGAGCAACTGTATCAAACCCCTGGTTAATATCCTCAATGACAGTGACACCGATGTTCAACTAGCTGCAGTGGATGCACTTTCTACTCTACTACTACTAGATCACACATCTCGCAGTTTTAAAAGAGTTGTTGATGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTACCACTCTTTTTACTGAAGTTAGATCTGAGGAGCTTCGGGAGAAGACAATTTGGATGATCGAAAAGATATTGAGAGTGGAAATTATCAGCAGTCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAACACGAGGAAACATGCTCAAGATGCTCTTACCCTTCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAATCAAGAGATAG 2598 0.4222 MDLARALGFDPGDRAEFFNQVKLFKGDPFRSQSVPERRVLVSLERILSNWSAEPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVIDYQIKSSVQSLNEEPLSVDQVERALDHVYKVSEEHPSSRYIIRNAGVVQLIVTLLSNNSKTIGSRLRSKALTTLLSMAKDEESKKIMLERGITRLAVHSLIGSSTKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRLMERVEDNVQCLAAAGRFGPLISRLRDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLFHQEGRGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFHTEDPSHELKSLAASTIANIVSKPGHWELASADKDGNPMHSEIIVLRLLGLLNCLPSQCQVIVLRILCGITLSPQASELVASHITSKGGFGTIIPFLEHLEVEHRVFAFKLTRLLSEWFSQYIANELRLSNKLTILKEKLLNNQSTSDERSDAAQILANISLSEDEIRTLLGGNFVEWTAVTLKNQLRVSNARSSQTAAGMQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGLKNLSEFGRSDTARDSKPPSSSGFCSSLVLVCGRASSQPSTCPIHNRPCHEDSQLCLLKSNCIKPLVNILNDSDTDVQLAAVDALSTLLLLDHTSRSFKRVVDELEHLGAVDALTTLFTEVRSEELREKTIWMIEKILRVEIISSRYALNHSLVRALVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRIKR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00619 865 Coils Coil 306 326 - -
Vian6g00619 865 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 52 855 - -
Vian6g00619 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 150 IPR013083 -
Vian6g00619 865 SMART arm_5 718 758 IPR000225 GO:0005515
Vian6g00619 865 SMART arm_5 633 674 IPR000225 GO:0005515
Vian6g00619 865 SMART arm_5 395 438 IPR000225 GO:0005515
Vian6g00619 865 SMART arm_5 187 231 IPR000225 GO:0005515
Vian6g00619 865 SMART arm_5 766 807 IPR000225 GO:0005515
Vian6g00619 865 SMART arm_5 357 394 IPR000225 GO:0005515
Vian6g00619 865 Pfam Armadillo/beta-catenin-like repeat 724 756 IPR000225 GO:0005515
Vian6g00619 865 SUPERFAMILY RING/U-box 76 148 - -
Vian6g00619 865 SUPERFAMILY ARM repeat 388 805 IPR016024 -
Vian6g00619 865 SUPERFAMILY ARM repeat 161 442 IPR016024 -
Vian6g00619 865 ProSiteProfiles U-box domain profile. 74 154 IPR003613 GO:0004842|GO:0016567
Vian6g00619 865 Pfam U-box domain 79 148 IPR003613 GO:0004842|GO:0016567
Vian6g00619 865 Gene3D - 151 676 IPR011989 -
Vian6g00619 865 CDD RING-Ubox_PUB 79 134 IPR045210 -
Vian6g00619 865 Gene3D - 715 861 IPR011989 -
Vian6g00619 865 SMART Ubox_2 78 147 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00619 Vian-Chr6 22715516 22721032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00619 76 854 U-box Gene Family AT1G20780 29.686 3.75e-86 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00619 - - gmx:102659945 1486.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00619 6 22715516 22721032 Vian6g00619 6 22715516 22721032 ECH