Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00615 ATGACACCGCCCTTCACTCTCTCCCTCTCCCTCTTCGCCGTTTTCTCTATAACCGCCGTGCACGGCCTCGGCTCCGCCGCCACCGTCGCCGTCACATACGGCACCGCCACCGTCTGCGGTATCGTCGCCGGGGAGCTCCACCACCGCATTCAGTGCTCCAGGGACGGAAGGCGCGTCCCTCTCACACTCCCCAACTCCTCCTTCGATGCCATCTCTGGCGGCAGGAGCTTCTTCTGCGGCCTGCGCTCCGGCGGCCGGAGCCTCCACTGCTGGGACACTGCCGCCGCAGACGGTTCGCTCTGCCCCAAGAGGGTCTTCCACAGCGACGTGGTGCAGCTGGCCGACGTGGCAGTTGGTGATTCCCAGGTGTGCGCGAGGGAGGTGCAATCCGGTGTGGTGAGGTGCTGGAGAGGAAACAAGAGGGTCGAATTTTCTTCTCCCTCGGAGAGCTTAAGGTTTCGGAGTGTCACATGTGGTCGTGGTTTTTCATGTGGGATATTGAGAGAGAGCGGGAGGGTTGTGTGTTGGGGTGGTGGTGGTGGTGATGAGGGTGCATATATCAGTGGTGAGATTCAAAGAAAGTTTGAGAATTTTTCTATGTCGAGTTTGGTTGCTGGGGTGTCTCATGCATGTGGTTTGACTCTTCACGGGGCTTTGGTTTGTGGAGGGAACAATCGTTCAGGTCAACTTGGAAACAGTGCTTTTTTAAGTTCTTTGGATTTTTCGGCTCTTGCTTTGGGAGAGGGTTTCACGTGTGGTATTAGGCGGAGGAATGGGATTGTTGTGTGTTGGGGTGGTGGTTTTGATAGTGATGTGGTGAAGGGTGTTTCTTTTGAGTCTCTTGTGGCTGGTTTGGATTATGTTTGTGGGTTGATGACTGGGAATTTGTCTGTGGTTTGTTGGGGTGGTAAGGGTGGGTTTGATGTGGCTAATGAGATTCCATTGGGAGAGATTCTCCCGGCTCCTTGTGTGGAGGGTGGATGTGGTAGCTCTTGTAGTACATATCCTGATTCTGATGCTCTTTGTCATGGGTCTGGGAGTATTTGTTATGATTGCCAAACTGAGGTTCCACTGGCTGTGCCATTGTTTCCACCACCATCATCACAAGTGCCTTCTTCACATGAAGGAAGAAACTTGAAGGAGTTTTTGGTGTTTCTGGTTGTTGGATCAGTTGGGGCTTTTGCGGGTCTATGTACTATTGTTTATTTCCTTTGGTTTAGTGCAAAGAGGGTTTTGGTGAGGAGAGAAGTAAGTAATAGTTCTGTGAAGCCTACAAGCTCGGAGAGTGATGCCTATGTGGATATAATCCCAATGCCTAATGTTGGTTCCAATGGAACAACCTTCAGAACTTTTTCTAGCAAAAGCCATGGGTCAAGAAGATTGAGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTGGACAGGACCGAGAGTTTCTCATTGCGTGAACTGGCTACAGCCACTGACAATTTCTCATTGTATAATAAGATAGGTGCTGGTAGCTTCGGCAGTGTTTACAAAGGCATTCTAGGAGATGGTCGTGAAGTGGCCATTAAAAGAGGAGATACTAGTACTGTGAAGAAGAAATTTCAGGAGAAAGAAATTGCTTTTGATTCTGAATTGGCCATGCTGTCCCGGCTTCACCACAAGCATTTGGTGAGGCTAATTGGGTTCTGCGAGGAGAACGATGAGAGGCTTTTGGTCTATGAGTACATGAGCAATGGCTCACTTTATGACCATTTGCACGACAAAAACAATACAGAGAAGAGTAGCAGCATTTTAAATTCTTGGAAGATGCGGATCAAGGTTGCTTTGGGTGCTGCTAGGGGAATTGAATACATTCACAACTATGCTGTGCCACCCATTATTCACAGGGATATCAAGTCATCAAACATACTTTTGGACTCAAACTGGAATGCCAGAGTATCTGATTTTGGATTGTCACTAATTTGGCTCGAGAGTGAGCAAGAGTTGATGTCCACCAAGGCAGTTGGAACTGTTGGCTACATAGACCCTGAGTACTATGTGCTGAATGTGCTAACCACAAAGAGTGATGTGTATGGTTTAGGAGTGGTGATGCTGGAGCTTCTCACAGGAAAGAGAGCAGTGTTCAAAACTGAAGATGGGTCAAGCCCTATAGGGGTAGTGGAACACACAGGGCCAAAGATAGCATCAGGAGAGCTTTGGAGTGTGTTGGATTACAGAGTTGGACAGCCAGAAGTAAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCACTGTGTGAACATGGAGGGAAAAGAGAGGCCAGAAATGACTGACATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAAGGCAGCCCTACCAGCATTTCCCTTGCTTCCTTCTCTGCCCCTCTTGAATGA 2400 0.4888 MTPPFTLSLSLFAVFSITAVHGLGSAATVAVTYGTATVCGIVAGELHHRIQCSRDGRRVPLTLPNSSFDAISGGRSFFCGLRSGGRSLHCWDTAAADGSLCPKRVFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGNKRVEFSSPSESLRFRSVTCGRGFSCGILRESGRVVCWGGGGGDEGAYISGEIQRKFENFSMSSLVAGVSHACGLTLHGALVCGGNNRSGQLGNSAFLSSLDFSALALGEGFTCGIRRRNGIVVCWGGGFDSDVVKGVSFESLVAGLDYVCGLMTGNLSVVCWGGKGGFDVANEIPLGEILPAPCVEGGCGSSCSTYPDSDALCHGSGSICYDCQTEVPLAVPLFPPPSSQVPSSHEGRNLKEFLVFLVVGSVGAFAGLCTIVYFLWFSAKRVLVRREVSNSSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSHGSRRLRRHRSGSSSKHVDRTESFSLRELATATDNFSLYNKIGAGSFGSVYKGILGDGREVAIKRGDTSTVKKKFQEKEIAFDSELAMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNTEKSSSILNSWKMRIKVALGAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWLESEQELMSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPIGVVEHTGPKIASGELWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNMEGKERPEMTDIVANLERALAFIEGSPTSISLASFSAPLE 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00615 799 FunFam Serine/threonine-protein kinase-like protein CCR4 572 790 - -
Vian6g00615 799 MobiDBLite consensus disorder prediction 451 474 - -
Vian6g00615 799 SMART serkin_6 491 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00615 799 ProSitePatterns Protein kinases ATP-binding region signature. 497 528 IPR017441 GO:0005524
Vian6g00615 799 Pfam Protein kinase domain 493 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00615 799 SUPERFAMILY RCC1/BLIP-II 24 267 IPR009091 -
Vian6g00615 799 ProSiteProfiles Protein kinase domain profile. 491 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00615 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Vian6g00615 799 Gene3D Phosphorylase Kinase; domain 1 452 571 - -
Vian6g00615 799 Gene3D Transferase(Phosphotransferase) domain 1 572 783 - -
Vian6g00615 799 CDD STKc_IRAK 497 777 - -
Vian6g00615 799 MobiDBLite consensus disorder prediction 455 469 - -
Vian6g00615 799 Gene3D - 14 185 IPR009091 -
Vian6g00615 799 Gene3D - 192 362 IPR009091 -
Vian6g00615 799 FunFam Somatic embryogenesis receptor kinase 1 462 571 - -
Vian6g00615 799 SUPERFAMILY Protein kinase-like (PK-like) 468 775 IPR011009 -
Vian6g00615 799 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 201 785 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00615 Vian-Chr6 22598529 22600928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00615 6 790 Receptor kinase-like Gene Family AT3G55950 51.043 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vian6g00615 Pkinase 2.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00615 - - gmx:100776682 1319.29