Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00610 ATGGCACACCACACCATGGAGGAGGACTTCAACATCTTGGAGATGAACACTGAGCCTTGTAACAACAGCAATGCAACATGTGCAAAGACAGCAGCAGCACCCCCACCACAGGAACAGAACAACCTCACATCTTCAACTTTGACAAAGAAGTGTCCATTTCTGGTCACCAAACTTCACTGCCAAAGGCTTAGGAGTTTCACAGCAAATTTGAAAGAGGTTGTTTTCGGCACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATGGCCTTGGAAGGCCTTGGATTTTTGCTCTGAGCCTGCTTGGACTCACCCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGCTCTCTCTGCTGGGTTCCATTCTCTCAAACCTGCTATTAGTTCTTGGAAGTTCCCTCCTTTTTGGAGGCTTAGCCAACCTAAGGAAGGAGCAAATATATGACAGAAAACAAGCAGATGTAAACTCACTGGTTTTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGCAGGAGAATATCATTCAATAGCCACTAGCAATCTACAATTATCCAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCCGGATACATCTTCTTCCAATTAAAAACACATCGACAATTTTTTGATGCACAAGAGGAAGATGAAAACGAAGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGCATGACACTTGTCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGTTTCATTAGCATAATTTTGTTACCAATTGTGGGAAACGCTGCAGAGCATGCAGGCTCAATCATTTTCGCTTTCAAGAACAAGTTGGACATATCATTAGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGATTCCATTAAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGCTGCCTTGCTTTTACAATCATAGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACCTGAAAGGAGTGGTTCTTTTCCTGTGTTACATGATCATTGCTGCATGCTTTTTTGTTCTCAAAACTCCACTAATCAATGAAGCATAG 1317 0.4222 MAHHTMEEDFNILEMNTEPCNNSNATCAKTAAAPPPQEQNNLTSSTLTKKCPFLVTKLHCQRLRSFTANLKEVVFGTKLAVLFPAVPLAVVADFYGLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKLSLLGSILSNLLLVLGSSLLFGGLANLRKEQIYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGEYHSIATSNLQLSRASSIVMLLAYAGYIFFQLKTHRQFFDAQEEDENEEEKAVIGFWSAFTWLVGMTLVISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVIPLSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYLKGVVLFLCYMIIAACFFVLKTPLINEA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00610 438 NCBIfam calcium/proton exchanger 84 428 IPR004798 GO:0006816|GO:0015369
Vian6g00610 438 FunFam Vacuolar cation/proton exchanger 275 429 - -
Vian6g00610 438 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 55 431 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vian6g00610 438 FunFam Vacuolar cation/proton exchanger 130 274 - -
Vian6g00610 438 NCBIfam calcium/proton exchanger 65 428 - -
Vian6g00610 438 Pfam Sodium/calcium exchanger protein 101 258 IPR004837 GO:0016020|GO:0055085
Vian6g00610 438 Pfam Sodium/calcium exchanger protein 285 426 IPR004837 GO:0016020|GO:0055085
Vian6g00610 438 Gene3D - 130 429 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00610 Vian-Chr6 22534915 22537780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00610 37 433 Antiporters AT2G38170 67.654 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00610 K07300 - gmx:100778821 684.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00610 6 22534915 22537780 Vian6g00610 6 22534915 22537780 ECH
Vian6g00610 6 22534915 22537780 Vian7g01942 7 31357234 31360882 PCT