Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00607 ATGGGAAAGTGTTCCTTCAAGGACTCTCTGAAGGCTCTGGAAGCTGATATTCAGTATGCTAATACTCTCATTGACATGCTTGTACTTGGATCAGTCACAGAGATTCTCTTAGCAGAGACATTGGACCATCCAAGGGAAAGAGATGGAGGATGCTTTCAGATGAGAATATCTTACAGTCCAGCAGCTCCTATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGTTTGGCTGGTGCTCTGGGTTTGCTGAGAGTTCTAGTTTATGTGACTTATGGAAATGGGAATAATACCATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAACAGAAAGAAGTGGCTCTTAGGTACAAAGGAAAGAGTGGCTTAACGGAGGGAAAACTATCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTCTGCTTGGAAGTGACAGCTAAAGTTGTGTTGCCAGATTGCTGCCACCACATGTGTTTGCAGTGCTACAGAGATTGGTGTGAGAGATCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCGATTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACAATTTCCAAAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 777 0.4196 MGKCSFKDSLKALEADIQYANTLIDMLVLGSVTEILLAETLDHPRERDGGCFQMRISYSPAAPIFLFLVQWADYRLAGALGLLRVLVYVTYGNGNNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEVALRYKGKSGLTEGKLSDIDIEREEECGVCLEVTAKVVLPDCCHHMCLQCYRDWCERSQSCPFCRNSLKRIDSGDLWIYTDMNDVVDIGTISKENCKRLFLYIEKLPLIVPDPRYVFYDPFLR 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00607 258 SMART ring_2 162 199 IPR001841 -
Vian6g00607 258 SUPERFAMILY RING/U-box 150 206 - -
Vian6g00607 258 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Vian6g00607 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 209 IPR013083 -
Vian6g00607 258 Pfam Ring finger domain 161 200 IPR001841 -
Vian6g00607 258 PANTHER RING FINGER PROTEIN 41, 151 4 250 - -
Vian6g00607 258 FunFam RING/U-box superfamily protein 143 209 - -
Vian6g00607 258 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00607 Vian-Chr6 22490427 22492764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00607 127 203 C3H Transcription Factor Family AT5G41350 31.250 2.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00607 - K25840 gmx:100808567 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00607 6 22490427 22492764 Vian6g00607 6 22490427 22492764 ECH