Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00606 ATGATTCACTTCACAGTCACTAGAATGGGGGTTTCATGGGAAGAAAGTGTGACTTATTCCATCAACGCAATCTACCTTCTGTTCTCAGCGTACCTTGTCTTCGTGATGCAAATTGGGTTTGCCATGATATGTGCAGGTTCAGTGCGTGCAAAAAATGCAATGAACATAATGCTCACAAACGTCGTTGATGCAGTCGTCGGTAGCATCTCCTTCTACCTCTTCGGTTTTGCATTTGCATATGGCACTTCTAACCCTTTCATTGGCACTCATCTGTTTGCTCTATCCCACATTCCAAACGCAACTTACGACTATGCTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTAACAGGCATCACAAGTGGATCCATAGCTGAGAGAACTCAATTCAGTGCCTATCTTGTTTTCTCATTTTTCCTCAGTGGCTTTGTGTACCCAGTTGTTGCTCATTGGCTCTGGTCATCCAGTGGTTGGCTCAGTCCAAATTCAACTCACTTGTTCTTGGGTTCAGGAGCCATTGACTTTGCTGGGAGTGGAGTGGTGCATTTGGTTGGCGCAGTTGCTGGTCTTTGGGGGTCCATCATAGAAGGCCCACGGACTGGAAGATTTGATTCTTTAGGCAGGCCCATGCCTCTAAGAGGCCACAGTGCAACACTTGTTGTACTTGGGACCTTTTTGTTATGGTTTGGATGGTTTGGATTTAATCCAGGATCCTTTGACAAGATCCTTGTGGCTTATCCCGGCACGTCGGACCAAGGTAATTGGACCTCGGTGGGTCGCACTGCCGTTACAACCATATTAGCTGGTTCGACAGCCGGAATAGTTACTTTGTTTGGCCGAAGATTGTTAGTCGGCCACTGGGATGCAATGGATGCGTGCAATGGCTTGCTTGGTGGGTTTGTTGCCATCACGTCCGGATGCTCTGTTGTTGAGCCATGGGCCGCCATTATTTGTGGGTTTGTGTCGGCTTGGGTTTTAATTGGGCTGAACATTGTGGCCCTAAAGTTGAACTATGATGATCCACTAGAGGCAGCCCAATTGCATGGAGGGTGTGGCACTTGGGGTTTGTTGTTTACTGGGTTGTTTGCCAAAGAGGAGTTTGTTATTCAAGTGTATAATTGTGGTGAGATTGGGGTTTCAAGACCCTATGGTGTACTACTTGGAGGTGGTTGGGGATTGTTTGGAGCCCAAGTGATTGAGATTTTGACAATCTTTGGATGGGTGAGTGTAACAATGGGCCCTATATTCTATGCCTTGCAGAAGCTTGAGATATTGAGAATTCCTGTGAATGAGGAAGTTACTGGGCTTGACATTTCTTGCCATGGAGGGTATGCTTATGCTCAAGAAAACTATCATCTCAGACTTTATGGAGATTACATGCCTATTCAACATGCCCTATCTTAG 1407 0.4606 MIHFTVTRMGVSWEESVTYSINAIYLLFSAYLVFVMQIGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGTSNPFIGTHLFALSHIPNATYDYAFFLYQWAFAIAVTGITSGSIAERTQFSAYLVFSFFLSGFVYPVVAHWLWSSSGWLSPNSTHLFLGSGAIDFAGSGVVHLVGAVAGLWGSIIEGPRTGRFDSLGRPMPLRGHSATLVVLGTFLLWFGWFGFNPGSFDKILVAYPGTSDQGNWTSVGRTAVTTILAGSTAGIVTLFGRRLLVGHWDAMDACNGLLGGFVAITSGCSVVEPWAAIICGFVSAWVLIGLNIVALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQVYNCGEIGVSRPYGVLLGGGWGLFGAQVIEILTIFGWVSVTMGPIFYALQKLEILRIPVNEEVTGLDISCHGGYAYAQENYHLRLYGDYMPIQHALS 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00606 468 Gene3D Ammonium transporter AmtB like domains 7 459 IPR029020 -
Vian6g00606 468 PANTHER AMMONIUM TRANSPORTER 18 443 - -
Vian6g00606 468 FunFam Ammonium transporter 5 456 - -
Vian6g00606 468 Pfam Ammonium Transporter Family 25 447 IPR024041 GO:0008519|GO:0016020|GO:0072488
Vian6g00606 468 NCBIfam ammonium transporter 22 447 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vian6g00606 468 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vian6g00606 468 SUPERFAMILY Ammonium transporter 19 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00606 Vian-Chr6 22488241 22489647 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00606 15 451 Inorganic Solute Cotransporters AT1G64780 64.865 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00606 K03320 - pvy:116129597 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00606 6 22488241 22489647 Vian6g00606 6 22488241 22489647 ECH