Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00604 ATGAAGAAAACCCCAGTTCACAGTTTGCATCAATCTAATCAAAGAAAAAGGAATGTTGGTGTCCAAGATAGAGGTGCAGGGAATGGCACAGGGAAGCGCAGTGTTGAGAACCATTCTGTTCTGACATATTTCAATTCCGTCAAGAATTTTTTTTCATTTTTTCTATCTGGGAAAAAAAAAATTCCCTCAGAAGCCCCTCAGAGTGATGACGGAAAGACCACACACAAGGTTGGAGGGGTATCGTCTTCCGCAGATGTATCGTCTGATAGTTCTAGGAGTTCATCAAAGTATGTATTCTCTCAATCCTCTGCATCATCTGGCCCTTCAAGTAGCCAGCTTGGAGTTGGGAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTCCGGACAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAGGGGAAGGCTTTATGATGGATCCCTCGTGGCTGTGAAGCGTGCCAGGAAGGATTTGCAGAACAAGAACTTGGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAATATTGAGCACAGGAGCCTTGTGAGGTGGCGTGGGTATTTGGAGCATGGAGATGAAAAGATTCTTGTTGTTGAATATGTTAGTAATGGAACTCTTCGAGAACATTTAGATGGATTTCGGGGAAATGGACTTGAAATTGGTGAGCGTCTGGACATAGCCATTGATGTAGCTCATGGAATTACTTACCTTCACATGTACACAGATCATCCAATTATTCATAGGGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTAGCAGACTTTGGTTTTGCTCGGTTGGGTTCAGAAGACCCTGCTGCAACCCATATTTCAACTCAAATAAAAGGAACAGCTGGGTACATAGATCCTGATTACATGAGAACGCATCATCTATCTGAAAAGAGTGATGTCTATTCCTTTGGTGTGTTGCTTGTTGAAATGATGACAGGACGACATGCAGTTGAACCAAAGAGACCTCTTAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAGGAGAAGTTGTGATTGCCATGGATCCAAGACTAAAGAGAAGTCCAGCATCAAACAAAGCAGTACAAAAGGTTCTGAAGCTAGCTTTCCAATGCCTTGCACCAATGAGGCGATCACGACCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGAAATCCGCAAAGATTTTACAGATAGAACATCTTCTCACACTCATAATGGTTCTCACCATTCTGCAAATTTCCCTCAAAGAGATGGAAGGAAGAATAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAGTTTGTATCGGCATAA 1365 0.4168 MKKTPVHSLHQSNQRKRNVGVQDRGAGNGTGKRSVENHSVLTYFNSVKNFFSFFLSGKKKIPSEAPQSDDGKTTHKVGGVSSSADVSSDSSRSSSKYVFSQSSASSGPSSSQLGVGNFTFEEIYKATAKFSPDNKIGEGAFGTVYRGRLYDGSLVAVKRARKDLQNKNLAEFKNEINTLSNIEHRSLVRWRGYLEHGDEKILVVEYVSNGTLREHLDGFRGNGLEIGERLDIAIDVAHGITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGSEDPAATHISTQIKGTAGYIDPDYMRTHHLSEKSDVYSFGVLLVEMMTGRHAVEPKRPLSERVTIKWAMQLLKQGEVVIAMDPRLKRSPASNKAVQKVLKLAFQCLAPMRRSRPSMKSCAEVLWEIRKDFTDRTSSHTHNGSHHSANFPQRDGRKNRHKTYGIEDGKGYKFVSA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00604 454 Gene3D Phosphorylase Kinase; domain 1 90 206 - -
Vian6g00604 454 SMART serkin_6 130 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00604 454 Gene3D Transferase(Phosphotransferase) domain 1 207 428 - -
Vian6g00604 454 MobiDBLite consensus disorder prediction 428 442 - -
Vian6g00604 454 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 207 417 - -
Vian6g00604 454 PANTHER OS01G0750732 PROTEIN 59 413 - -
Vian6g00604 454 Coils Coil 162 182 - -
Vian6g00604 454 Pfam Protein tyrosine and serine/threonine kinase 133 403 IPR001245 GO:0004672|GO:0006468
Vian6g00604 454 MobiDBLite consensus disorder prediction 1 34 - -
Vian6g00604 454 MobiDBLite consensus disorder prediction 413 442 - -
Vian6g00604 454 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 94 206 - -
Vian6g00604 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Vian6g00604 454 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Vian6g00604 454 ProSiteProfiles Protein kinase domain profile. 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00604 454 SUPERFAMILY Protein kinase-like (PK-like) 106 406 IPR011009 -
Vian6g00604 454 MobiDBLite consensus disorder prediction 62 93 - -
Vian6g00604 454 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00604 Vian-Chr6 22336851 22339625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00604 91 407 Receptor kinase-like Gene Family AT2G23450 42.500 8.16e-67 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Vian6g00604 PK_Tyr_Ser-Thr 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00604 - - gmx:100815871 711.449