Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00587 ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTTTATCTCCTCATCCTCTTGGTCCACCTTGGCTGCTTCATCTTCACCACCACCGCCGGAGGAAAAAAAACGCCACCATCAAAGAAACGCAAAATCTCACCCTCCTCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATTAAACACCTTCTTTCCACCAAATCCTGCAAAACCCCCAAAACCGCCACCTCCCAATTATCCCCTCAATCTACCGCCCCCACCTCCACAACCTCCGTCTCCCCCGCAGCAGCACACTCCCTCATTTCACTAACACAACCCGACCCGGACAGAAAACAACCCGGGTCTTGTCCCGAATCCGACATTTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCCTGCGGCGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTCAAACACGCGGTTTCGGACCTATCCGGATCCGACCCAGGTCACAACATCGTCCAGATCATCTTCAAATCGGGTTGGCCTGAATCCAAACCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCAAAGATCCTCGCCAAGTTCGAGGAGTACCGCGAGGTCGTCAAGTCCAAAGCGGCGCGTAACGGATCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGGAACGAGCTCATGCGCTTCCACTGCTCCACGTTTCTGTGCGACTTGGGACACAGTGGGGATTCGTCAATTTGTTCTCAGCAATTTTGTAATATATGTGGAATTATTAAGTCGGGGTTTTCCCCTAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGTGCACACGTGGCTATACCAGATGACGTGGAACGAGAATTCGGCTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTCATTGCGGGTCGGGTTGGATCCGATTCAGACGACGCCGAAAAAGCTGATGGTGGTTTTGATTCGGTAATGGCGAGGTCAGAGACTGGAGTTTACACGCGGCTTGACGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTCGTGATTGTGTATACTGTGTGA 1146 0.5349 MASSIATFFNKFLYLLILLVHLGCFIFTTTAGGKKTPPSKKRKISPSSPSHPKFKTHKALSSSWHFIKHLLSTKSCKTPKTATSQLSPQSTAPTSTTSVSPAAAHSLISLTQPDPDRKQPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPSPTITRILKIHNSPKILAKFEEYREVVKSKAARNGSLTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFGFMNVKRAMLVCRVIAGRVGSDSDDAEKADGGFDSVMARSETGVYTRLDEEELLVFNPRAVLPCFVIVYTV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00587 381 MobiDBLite consensus disorder prediction 32 55 - -
Vian6g00587 381 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 63 379 - -
Vian6g00587 381 MobiDBLite consensus disorder prediction 79 98 - -
Vian6g00587 381 ProSitePatterns Zinc finger C2H2 type domain signature. 145 166 IPR013087 -
Vian6g00587 381 Gene3D - 166 380 - -
Vian6g00587 381 SUPERFAMILY ADP-ribosylation 170 380 - -
Vian6g00587 381 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 167 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00587 Vian-Chr6 22044794 22045939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00587 87 381 C2H2 Transcription Factor Family AT2G29660 59.211 9.05e-113 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian6g00587 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00587 - - var:108341815 716.457