Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00586 ATGAAAGACATAGGAGGAGGTGGTGCCATTATTCCAGTTAATGGATCTAACCCTTCAAAGTCTTCTGTTGGTCCTCCTTTGACAGCCATAGAGAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCAGCAACAGCCACAGAATGTTGCAAACAATATCCATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAAACTACAACATTTTTTGGCATAATGGTGGTAGGGAAGTGAACTTTGTTGAAAAGCTTTTAGCAAATGAAGTGGAAGGTCTGAATTGGACACAACAAGTACCTCCACTGTGTTTGAAAGAAGATTTGCTTGTGTCGGGAAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTGTACCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGGTAAAGTTGGTGAAGCAACATGGTACAGGGAAATGGTCTCAGATAGCAGAAAAGTTGGATGGAAGGGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAAATCTTAGTAAAATATCATGCCGAGTTTGGAAATCGATGGGCAGAAATTGCTAAACAGATAAAAGGAAGAACCGAAAATGCAATAAAAAACCATTGGAATGCCACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGGAATGGGAAATGGAAAGCCATTGTCCTCTATTCTGCAAGACTACATCAAAAGTCTGTCTCTAAGCAACACTTCAAATACCTCTGTGGAACAAACATTAGCATCACAACAGTTATCTGATATTGCCACCAACAGCAATTTCTCACTAATGTCTGAGACCTATGATGATGAGATTTCCTTCATGCAACAATTTTTCGATGAAAACAATGTCATTGCTGAATCTGTTAAGCAGACCAAAACTTTGAACAACTCTTCTGCAGGCTTTAATGGTTATCATCATCAAAGCAGTAACAATAGTCAGTTTCTCACTGAACTCACTCAATCAGGATCTGTTGTTCATTCAAACTCACAAATGTCCTTTGATGAGAGTCTTTTCCTCTCTAAAAGGACTCCTATAGGTTTTGATGTCTGTCTCTCTCATGGAACTGCGAAGCAAAATTGGTTATGGGAAAGAGGGATAGGGATATAG 1185 0.4042 MKDIGGGGAIIPVNGSNPSKSSVGPPLTAIERFLWGQQSHSSQQQPQNVANNIHASVLDGFGGSNYNIFWHNGGREVNFVEKLLANEVEGLNWTQQVPPLCLKEDLLVSGKNRKGVGRKPKEGSSVPWIKGQWTEEEDRKLVKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEEKILVKYHAEFGNRWAEIAKQIKGRTENAIKNHWNATKRRQNSRRKNKRAGMGNGKPLSSILQDYIKSLSLSNTSNTSVEQTLASQQLSDIATNSNFSLMSETYDDEISFMQQFFDENNVIAESVKQTKTLNNSSAGFNGYHHQSSNNSQFLTELTQSGSVVHSNSQMSFDESLFLSKRTPIGFDVCLSHGTAKQNWLWERGIGI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00586 394 Gene3D - 183 245 - -
Vian6g00586 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 231 IPR017930 -
Vian6g00586 394 FunFam Transcriptional activator Myb isoform A 129 182 - -
Vian6g00586 394 ProSiteProfiles Myb-like domain profile. 130 176 IPR001005 -
Vian6g00586 394 MobiDBLite consensus disorder prediction 226 240 - -
Vian6g00586 394 MobiDBLite consensus disorder prediction 225 246 - -
Vian6g00586 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 180 IPR017930 -
Vian6g00586 394 SUPERFAMILY Homeodomain-like 127 223 IPR009057 -
Vian6g00586 394 CDD SANT 184 227 IPR001005 -
Vian6g00586 394 ProSiteProfiles Myb-like domain profile. 177 227 IPR001005 -
Vian6g00586 394 SMART sant 181 229 IPR001005 -
Vian6g00586 394 SMART sant 129 178 IPR001005 -
Vian6g00586 394 MobiDBLite consensus disorder prediction 1 23 - -
Vian6g00586 394 Pfam Myb-like DNA-binding domain 133 191 - -
Vian6g00586 394 PANTHER MYB PROTEIN-RELATED 118 278 - -
Vian6g00586 394 CDD SANT 133 176 IPR001005 -
Vian6g00586 394 Gene3D - 129 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00586 Vian-Chr6 22029385 22031995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00586 23 335 MYB Transcription Factor Family AT5G58850 39.167 1.09e-70 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian6g00586 Myb_DNA-bind_6 1.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00586 K09422 - gmx:100786295 418.698