Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00560 ATGGCAGAGCAGAGTGTGGATTGGTGGAAGGAATTGAGTGTGGATTGGAATGACTTGATCGGTGTGTCATCGGACACCTCCAATGTTCCAACCACCTTCCAGAGTCATCTTCTTCCTATCAATGTGGAAGCTCCTTTGATGTTTCCACCGTCTCAAACATTGGAACACATGCAGTTTCATTCGAACAAAGGAAGAAGGATAACATGGACCAAAGCCGAGCATAAGAGGTTTTTAGAAGGACTTGATATATATGGAAAAGGAAATTGGAAAAACATTTCAGCCTACATTCAAACAAAGAGTGCAAGTCAAGTGGCCAGCCATGCACAGAAGTATTTTATCCGTCAAAGTAAATCAAAAGAGGAAAAGAAGAGAAAAAGCATTCATGACATGGTTATTGAGAATACTACTCATACTAATATTCATATTCAAAATTCATCATCTATTGCAAGTTCACTATTTTACGAAATGCAACCACAACAACAAGTTATACCCTTCAATCCTCAAATCAACATGTCTCATCTACATGAGCTAAATCATATCAATATGACTTATCGACCACGAGAAGAAATGATCAACCAAAATCATATGAATTCCAACAACATAATTGATTATCCTGCAAACTTTAATCAAATGCAATCCTCGCAAGTGATACCCTTCAATGCTCACATCAACAGGCCTCATCCACCAGAGTTATTCATGTAG 702 0.3803 MAEQSVDWWKELSVDWNDLIGVSSDTSNVPTTFQSHLLPINVEAPLMFPPSQTLEHMQFHSNKGRRITWTKAEHKRFLEGLDIYGKGNWKNISAYIQTKSASQVASHAQKYFIRQSKSKEEKKRKSIHDMVIENTTHTNIHIQNSSSIASSLFYEMQPQQQVIPFNPQINMSHLHELNHINMTYRPREEMINQNHMNSNNIIDYPANFNQMQSSQVIPFNAHINRPHPPELFM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00560 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 116 IPR017930 -
Vian6g00560 233 PANTHER TRANSCRIPTION FACTOR KUA1 60 221 - -
Vian6g00560 233 SMART sant 65 114 IPR001005 -
Vian6g00560 233 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vian6g00560 233 CDD SANT 68 112 IPR001005 -
Vian6g00560 233 Gene3D - 67 117 - -
Vian6g00560 233 ProSiteProfiles SANT domain profile. 69 116 IPR017884 -
Vian6g00560 233 NCBIfam myb-like DNA-binding domain, SHAQKYF class 65 115 IPR006447 GO:0003677
Vian6g00560 233 ProSiteProfiles Myb-like domain profile. 61 112 IPR001005 -
Vian6g00560 233 SUPERFAMILY Homeodomain-like 64 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00560 Vian-Chr6 21388886 21389819 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian6g00560 Myb_DNA-binding 5.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00560 - - vra:106774767 345.125