Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00558 ATGACGGAGCAGAGTGATGAATGCCAGAATGAATTTCGTGCTTCGCCTTCAAAACTGTTGCCTATCATTCAAACTCAGTCTTCTCAGTCTTCTTCACCGCACAACTTCAATGATATGTCGGAAACAACCTCCCCCCTCAGCTGCCCTGTTCAAGATGTCGTCGAATCTCTTCCGATGTCGTCGTCGTCTCAAACATCACAACGTGACAACATGCGAGTTCAGTCCAAAAAATCGAAAAGGATAACTTGGACTACAGAAGAGCATAGACGGTTTCTAGAAGCACTCAGTAAATATGAGAAAGGAAACTGGAAACAAATTTCAGCATATATTCAAACAAAAAATGTAACTCAAGTAGCCAGTCATGCACAAAAGTATTTTATCCGTCAAGGTAAATCAGAAGAGCAAAAAAAGAGAAAAAGCATTCATGACATGGTTTTGGATACTAATATTGATATTGAGAATTCATCTTCTTCTAAAACAAATCCTGCAATTTCACAATTTTATGAGATGCAACCATTGCAAATGCAACCACAACAATCAATACCTCCTACGCAGTTTAACCAGAGACAACCACCGCAGGTGCAACCACTGCAAAGACAACCACTGCAATCAGTACATCATACACAGTTTAACCAAAGACAACCACCACTGGTGCAGCCACTGCAATCAGTACATCATACACAGTTTAACAAGATTCGACGAACACATAGTGTAATGGAGGCGAATTCTTTCAACAACAAAGCTCATCATCCTACACAGTTTGCCAAGATGCAACCAGTACATCCAATGGCAAGTGTGAATTCCAACAACATAGTTCATCAACCTGCACAGTTTAATCCACCAACAACGAACGTCTTCCTGCAGGTTAATCCCGTCAACACCATAATTCATCATCCCTCGCAGTTAAATCAAATGCAACCGACAAGAGAAACAGTGTATACTAATGTTAAGAATTGGTCAAGAGGATGA 969 0.4045 MTEQSDECQNEFRASPSKLLPIIQTQSSQSSSPHNFNDMSETTSPLSCPVQDVVESLPMSSSSQTSQRDNMRVQSKKSKRITWTTEEHRRFLEALSKYEKGNWKQISAYIQTKNVTQVASHAQKYFIRQGKSEEQKKRKSIHDMVLDTNIDIENSSSSKTNPAISQFYEMQPLQMQPQQSIPPTQFNQRQPPQVQPLQRQPLQSVHHTQFNQRQPPLVQPLQSVHHTQFNKIRRTHSVMEANSFNNKAHHPTQFAKMQPVHPMASVNSNNIVHQPAQFNPPTTNVFLQVNPVNTIIHHPSQLNQMQPTRETVYTNVKNWSRG 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00558 322 MobiDBLite consensus disorder prediction 19 71 - -
Vian6g00558 322 MobiDBLite consensus disorder prediction 1 79 - -
Vian6g00558 322 MobiDBLite consensus disorder prediction 174 195 - -
Vian6g00558 322 SMART sant 79 128 IPR001005 -
Vian6g00558 322 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Vian6g00558 322 ProSiteProfiles SANT domain profile. 83 130 IPR017884 -
Vian6g00558 322 SUPERFAMILY Homeodomain-like 76 130 IPR009057 -
Vian6g00558 322 ProSiteProfiles Myb-like domain profile. 75 126 IPR001005 -
Vian6g00558 322 PANTHER TRANSCRIPTION FACTOR KUA1 25 252 - -
Vian6g00558 322 CDD SANT 82 126 IPR001005 -
Vian6g00558 322 Gene3D - 81 131 - -
Vian6g00558 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 130 IPR017930 -
Vian6g00558 322 NCBIfam myb-like DNA-binding domain, SHAQKYF class 79 129 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00558 Vian-Chr6 21328170 21329235 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vian6g00558 Myb_DNA-binding 6.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00558 - - vum:124848279 582.793