Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00550 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGCGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGAATCGCAGCGTACTGCTCCTAACGAACCAGGAAATTATGGGCAAGAACAGCAAGGGACCCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGACGGGTGAGGGGTACCGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGTTCAAACAACTCAGGCAAGGAAAAGGATAATGGTGCTGACTCTGTCCTGTCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACAGAACAGGTTCGAAGCACCTAGTTTCCAAAATGGCAGTGGCTCTTACAATAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACCGTTCAGGTCAGAACTAA 1005 0.4677 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKESQRTAPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRVRGTGGRFAKKSDAEGSNNSGKEKDNGADSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFEAPSFQNGSGSYNNHHGLQSSVYHSSSGERVEEGDRSGQN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00550 334 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 287 IPR001289 GO:0003700|GO:0006355
Vian6g00550 334 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Vian6g00550 334 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Vian6g00550 334 MobiDBLite consensus disorder prediction 1 20 - -
Vian6g00550 334 MobiDBLite consensus disorder prediction 246 287 - -
Vian6g00550 334 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Vian6g00550 334 MobiDBLite consensus disorder prediction 86 117 - -
Vian6g00550 334 MobiDBLite consensus disorder prediction 44 74 - -
Vian6g00550 334 MobiDBLite consensus disorder prediction 209 228 - -
Vian6g00550 334 MobiDBLite consensus disorder prediction 294 321 - -
Vian6g00550 334 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Vian6g00550 334 MobiDBLite consensus disorder prediction 209 334 - -
Vian6g00550 334 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Vian6g00550 334 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Vian6g00550 334 Gene3D - 174 236 - -
Vian6g00550 334 MobiDBLite consensus disorder prediction 1 30 - -
Vian6g00550 334 MobiDBLite consensus disorder prediction 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00550 Vian-Chr6 21088775 21091488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00550 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.585 1.74e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vian6g00550 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00550 K08064 - gmx:100808378 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00550 6 21088775 21091488 Vian6g00550 6 21088775 21091488 ECH
Vian6g00550 6 21088775 21091488 Vian7g01072 7 18950423 18952034 PCT