Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00535 ATGGAGACTCGGGTTGAAGGGAAACCTACTCGTCTTGCATCAGGGTTCTCAGATAACTTGTCTGAGACTTGCAAGATGGGTACTCCAAATGGAAGAGGAATTCACAAGTCTGATGATGAAATTCCTTTTGACTCCGACATAAATTATCACTCGGCTGAATCTAGTCTGGTGGAGGTACTTGGATCACATTCTGGAGAATCTCTGACTGTTCATCATGAAACGTTGGCTGGTATTGTTTATAGGAGCATACAAGTTGTGATTTTCTCTAACAAACTCAACTTGCTTATGCCTTTTGGGCCTGTTGCAATTCTTGTGCAGAAGTTGACTGCTCATCTTGGTTGGGTCTTTGCTCTGAGTTTGTTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCTACCGAGCAGCTGGCATTTTACAGTGGAGATACTGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAGTGGAATGACACGGGTTGTCCAGCTCTCTTTGCTGGGATCAATTTTGTCCAATATGTTACTAGTGCTTGGATGTGCATTCTTATGCGGTGGGATTGTTAATCATAAGAAAGAACAAGTGTTTAACAAGGCAACTGCTTCTGTGAATTCAGGATTACTGTTGATGGCAGTCATGGGCATACTTTTTCCAGCTGTGCTACACTATACACATACCGAGGTTCATGTTGGGAAGTCAGAGTTGTCCCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTGTTTTTTCAGTTAAAAAGTCAAAGAAGTCTCTATGTCTCTGTGAACGAGGAAGAGGGTCAGAGTGGAAACAACTCAAATGACGATGAATCACCAGATATTTCGAAATGGGAATCAATAATATGGCTTTCGGTTATGACTGCTTGGATATCAATCTTGTCTGAATACTTGGTTGGCGCTATAGAGGGAGCATCTACTGCATGGGAAATTCCAATTGCATTTATCAGTGTCATATTGCTTCCGCTAGTGGGGAATGCGGCTGAGCATGCCAGTGCTATAATGTTTGCCATGAAAGATAAACTTGACATTTCCATAGGGGTTGCAATAGGCTCATCCACACAGATATCTATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATGGGGCATTCTATGGACTTGAACTTTCAACTATTTGAAACTGCAGCACTATTTGTTACTGTTTTAGTTGTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGATTGATGCTTATTCTTTGCTATCTGATTGTGGCAGCCAGTTTTTATGTACATATAGATTCCTCTGAATAG 1362 0.4141 METRVEGKPTRLASGFSDNLSETCKMGTPNGRGIHKSDDEIPFDSDINYHSAESSLVEVLGSHSGESLTVHHETLAGIVYRSIQVVIFSNKLNLLMPFGPVAILVQKLTAHLGWVFALSLLGIMPLAERLGYATEQLAFYSGDTVGGLLNATFGNATELIISIYALKSGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHKKEQVFNKATASVNSGLLLMAVMGILFPAVLHYTHTEVHVGKSELSLSRFSSCVMLVAYAAYLFFQLKSQRSLYVSVNEEEGQSGNNSNDDESPDISKWESIIWLSVMTAWISILSEYLVGAIEGASTAWEIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISIGVAIGSSTQISMFVIPFCVVIGWIMGHSMDLNFQLFETAALFVTVLVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHIDSSE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00535 453 MobiDBLite consensus disorder prediction 1 21 - -
Vian6g00535 453 FunFam Vacuolar cation/proton exchanger 291 447 - -
Vian6g00535 453 NCBIfam calcium/proton exchanger 82 445 - -
Vian6g00535 453 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Vian6g00535 453 Pfam Sodium/calcium exchanger protein 112 269 IPR004837 GO:0016020|GO:0055085
Vian6g00535 453 Gene3D - 141 282 IPR044880 -
Vian6g00535 453 Gene3D - 290 447 IPR044880 -
Vian6g00535 453 FunFam Vacuolar cation/proton exchanger 143 282 - -
Vian6g00535 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 65 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vian6g00535 453 NCBIfam calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00535 Vian-Chr6 20744414 20748988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00535 44 453 Antiporters AT1G55730 72.439 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00535 K07300 - gmx:100799276 807.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00535 6 20744414 20748988 Vian6g00535 6 20744414 20748988 ECH