Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00534 ATGACGACGCCGCTGAATCTCGCCGCCGGAGATTTTTCGCTCCATTTCTCCTCATCGATTGGCTCGTACCGCCGGAACTCTGTCCGAGCAGTTGCAGCGGAAGCGGTCAAGGTGCGGCTGCCGGCGCCGAGCCTCTACGAGGTGCTGCGAATCCAACGCCACGCTTCGCCGACGGAGATCAAGTCTGCTTACCGGAGCCTCGCAAAGCTCTATCATCCCGACGCGGTGGTGCGCCATGCGACAGAGGACGTTAGAGCTGGCGAAGCTGCCGACGGAAACTTCATCCAGATCCGAAGCGCGTACGAGACGCTATCGGATCCATCGGCAAGGGCGACGTACGATCGAACGCTGACGGCGGTGCACGGCGGAAGACACCGCCATTTTCCGGTTCCTCTTAGCCGGAATCACTCGTCGACGTTTTACGCAACACGGAGATGGGAAACGGACCAATGCTGGTAG 459 0.6035 MTTPLNLAAGDFSLHFSSSIGSYRRNSVRAVAAEAVKVRLPAPSLYEVLRIQRHASPTEIKSAYRSLAKLYHPDAVVRHATEDVRAGEAADGNFIQIRSAYETLSDPSARATYDRTLTAVHGGRHRHFPVPLSRNHSSTFYATRRWETDQCW 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00534 152 SUPERFAMILY Chaperone J-domain 39 118 IPR036869 -
Vian6g00534 152 ProSitePatterns Nt-dnaJ domain signature. 94 113 IPR018253 -
Vian6g00534 152 Pfam DnaJ domain 45 114 IPR001623 -
Vian6g00534 152 Gene3D DnaJ domain 32 127 IPR036869 -
Vian6g00534 152 CDD DnaJ 46 106 IPR001623 -
Vian6g00534 152 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vian6g00534 152 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vian6g00534 152 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vian6g00534 152 SMART dnaj_3 43 109 IPR001623 -
Vian6g00534 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 13 152 - -
Vian6g00534 152 ProSiteProfiles dnaJ domain profile. 44 117 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00534 Vian-Chr6 20715202 20715660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00534 46 114 C2H2 Transcription Factor Family AT1G74250 44.928 2.13e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00534 - - var:108320973 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00534 6 20715202 20715660 Vian6g00534 6 20715202 20715660 ECH
Vian6g00534 6 20715202 20715660 Vian7g01078 7 18987131 18987556 PCT