Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00531 ATGAAGATCACTGTCATGACTGTTGATGAACAAATTCTCACATTGGATGTGGATCCCCACGAATCTGTGGAGAACGTCAAAGCATTGCTCGAGGTTGAGACTAGTGTGCCTCTTCAACAACAACAGCTTCTGTTCAATGGGAAGGAGGTGAAGAATTCTGAGAAGTTGAGTGCCCTTGGTGTTAAGGATGATGATTTGCTGATGATGGTGTCAGGTGCTGCGGCCGGCTCCGCCGCTTCTAGTGGGTCTACCAATGATTTGAGTTTGAATACCGATGGTTCCGCTGTCAACCCTGGTGCTTTCCAGCAGCACATAAGAAGAGATTCTAATTTGATGGGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAATAGATTGCAAGAAGTTTTGAGATTGCGTCATCGCCAAAGAGATGAATTAAAGCGTCAGAAAGAAGAAGAACTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCAGCTGCATTAGAACATAACCCCGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTTGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTTGTGGATTGCTGAGGCTTTTAGATCAGCGTTACAGAGGGATTGCTCATGGAGTTGGCCAGTCAGAAATATTGGGTCGCATACATGTAGCGCCAATCAAGATTGGGAGTATATTTTACCCATGCTCATTCTTGGTGCTGGACTCTCCCAATATGGAGTTTCTATTTGGACTGGATATGCTCCGAAAACACCAGTGTATAATTGACTTGAAAGAAAGTGTTTTGCGAGTTGGTGGAGGTGAAGTTTCTGTGCCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTTTAGATGAGGAAAAGTATGCTAAGGAAGCTTCTGGCTCTGGTGGCCATATTACATCAGGGAGCAATAATCCATCAACTGGAGGCCACCCTTCTGGAGGAGCTTCTAGTGACAGGGCTAAGGATTCTGAATTTGAAGCCAAAGTTGCAAAGCTTGTTGAGTTGGGATTTGAAAGAAATGCAGTTGTAGAAGCTCTTCAGATATTCAATGGCAATGAGAAACAGGCTGCTGGATTTCTTACTTTAAACAATTTTTACTTACTCAATTGA 1251 0.4317 MKITVMTVDEQILTLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVKNSEKLSALGVKDDDLLMMVSGAAAGSAASSGSTNDLSLNTDGSAVNPGAFQQHIRRDSNLMGQLFQSDPELAQAILGNDLNRLQEVLRLRHRQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKESVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGHITSGSNNPSTGGHPSGGASSDRAKDSEFEAKVAKLVELGFERNAVVEALQIFNGNEKQAAGFLTLNNFYLLN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00531 416 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 407 - -
Vian6g00531 416 MobiDBLite consensus disorder prediction 342 360 - -
Vian6g00531 416 CDD UBA_scDdi1_like 373 407 - -
Vian6g00531 416 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Vian6g00531 416 Pfam Aspartyl protease 179 301 IPR019103 GO:0004190|GO:0006508
Vian6g00531 416 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vian6g00531 416 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vian6g00531 416 SUPERFAMILY UBA-like 350 408 IPR009060 GO:0005515
Vian6g00531 416 SUPERFAMILY Acid proteases 187 302 IPR021109 -
Vian6g00531 416 FunFam DNA damage inducible 1 homolog 2 179 326 - -
Vian6g00531 416 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 367 410 IPR015940 -
Vian6g00531 416 SMART ubq_7 1 72 IPR000626 GO:0005515
Vian6g00531 416 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Vian6g00531 416 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Vian6g00531 416 Gene3D - 345 411 - -
Vian6g00531 416 MobiDBLite consensus disorder prediction 338 367 - -
Vian6g00531 416 Pfam UBA/TS-N domain 373 405 IPR015940 -
Vian6g00531 416 Gene3D - 1 86 - -
Vian6g00531 416 SMART uba_6 372 409 IPR015940 -
Vian6g00531 416 CDD RP_DDI 186 309 IPR019103 GO:0004190|GO:0006508
Vian6g00531 416 Gene3D Acid Proteases 180 326 IPR021109 -
Vian6g00531 416 Coils Coil 131 154 - -
Vian6g00531 416 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00531 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 2.15e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00531 K11885 - gmx:100779464 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00531 6 20610807 20620140 Vian6g00531 6 20610807 20620140 ECH