Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00527 ATGAGCGATTCTGCATACAGAGTCGAAACCACACCACGCCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTACCGAAAATCCGATCCTTTCAAGATCGGAAAGTGGAACTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTTCCAGAAATATCGAATCTTACAAGAGACAACCCTCCAATTGCATCTTTCATCATTCGGGTTGTAAGTTCTGTTGGAGATCGCAGGGCCATCATACACCCAGAAATAAAGGACAAAGTTCTAAAGAACAACGAGGATTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTTCTAGATTTGAAGACTGCATCCCCAAACAGTGGAGAACCTTGTTCCATTTGGGCAGAAGGATTTACTCAGCAAAGATCAAATGCAAATGCCATAGAGTGTCTTGGTAGAATGCTAACAGAAGGAATCCACACTGACATCACCATCAATGTTTCTGATGGAAGTATTGGAGCTCATAGAGCTGTTCTTGCTGCAAGATCACCCGTATTCCGCAGCATGTTTTCACATAATCTTCAAGAGAAAGAGTTGTCAACCATAAACATTTCAGATATGTCACTTGATTCATGCCAGACTTTTCTCAATTATCTCTATGGAATCATCAAACATGAAGAGTTTCTGATGCATAGGCTGGCCCTTCTTCGTGCAGCTGACAAGTATGACATATCTGATCTAAGAGATGCATGCCATGAGAGTCTTCTTGAAGACATTGACACAAAAAATGTACTTGAGAGGCTCCAAAATGCTTCTTTATATCAGTTGATGAAACTGAAGATGACTTGTATCCGGTATCTTGTGAAGTTTGGAAAAATATATGAAATCCGTGATGATTTCAACACCTTCTTGCATAATGCAGATAGGGATCTGATTGCCGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTTTGA 987 0.4022 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRDNPPIASFIIRVVSSVGDRRAIIHPEIKDKVLKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNSGEPCSIWAEGFTQQRSNANAIECLGRMLTEGIHTDITINVSDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSLDSCQTFLNYLYGIIKHEEFLMHRLALLRAADKYDISDLRDACHESLLEDIDTKNVLERLQNASLYQLMKLKMTCIRYLVKFGKIYEIRDDFNTFLHNADRDLIAEVFHEVLDAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00527 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Vian6g00527 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Vian6g00527 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Vian6g00527 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Vian6g00527 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Vian6g00527 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Vian6g00527 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00527 Vian-Chr6 20569326 20571166 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vian6g00527 BTB 1.1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00527 K10523 - gmx:100790186 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00527 6 20569326 20571166 Vian6g00527 6 20569326 20571166 ECH
Vian6g00527 6 20569326 20571166 Vian7g01963 7 31629065 31635016 PCT