Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00523 ATGAAAATGGTGCTGGGAGGTCTGAGAAACCTTTTGGATTCCCTTGGTGTATGCATATATGCTTTGAAAGCCTTAGATAATCTGCAATTACTAAAAATGGTACCAAGGTCCAAAGATAGTGTACCAGAGAATCTCAATCTGTCTCTCTGCCTGCCAATGGATGCTAAGTCTGCTGTAGAATTAATGGAGTCTTCTAACGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGACAGCATAGAACAACCAACAACCTCGGAATCTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATCATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCCTTTTACCATAGCTTGTCTGAGGAGGAACTTACACGAGTACAGGATTTCAACTTTGACCACCCTGATGCTTTTGATACTGAGCAATTGCTGTGCGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCGAAGTATGATTTTAAGACTTACAAGAGTGATGTGTTAAGAAGGGTGAACCCTTCGGATGTCATAATTTTAGAAGGCATCCTTGCTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGATACTAATGAAAAGAGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTAGGTCAACATGACCTGTGTAAAATATATCCAAATTTATATGTCATTCAATCAACTTTTCAGATACGGGGTATGCATACGCTGATACGTGATTCTCAAACAACAAAGCATGATTTTATATTTTACTCTGATCGGTTGATTCGATTGGTTGTTGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAACAAGTAGTCACTCCCACTGGTTCAGTATACACTGGTGTTGATTTTTGTAAAAGGCTGTGCGGTGTCTCTGTAATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGGGCATGCTGCAAAGGTATCAAGATTGGTAAAATTCTAATTCACAGGGAAGGCGACAACGGTCAGCAGCTAATATATGAAAAGTTGCCTAATGATATCTCAGACAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCTGCTGTTCAAGCAATTTCTTTACTCATAAGAAAAGGTGTTCCTGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTGCATGTTGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAAATCGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGGGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGATGAACAAACGGTTGTTTCTTCACAGTAG 1587 0.3963 MKMVLGGLRNLLDSLGVCIYALKALDNLQLLKMVPRSKDSVPENLNLSLCLPMDAKSAVELMESSNEVHFSGFHMDGFEQRKDSIEQPTTSESDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHSLSEEELTRVQDFNFDHPDAFDTEQLLCVMDKLKHGEAVDIPKYDFKTYKSDVLRRVNPSDVIILEGILAFHDPRVRELMNMKIFVDTDADVRLARRIRRDTNEKSRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQTVVSSQ 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00523 528 Gene3D - 301 516 IPR029057 -
Vian6g00523 528 FunFam Uridine kinase 96 300 - -
Vian6g00523 528 Pfam Phosphoribulokinase / Uridine kinase family 101 285 IPR006083 GO:0005524|GO:0016301
Vian6g00523 528 Pfam Uracil phosphoribosyltransferase 315 516 - -
Vian6g00523 528 NCBIfam uridine kinase 97 297 IPR000764 -
Vian6g00523 528 CDD UMPK 101 297 IPR000764 -
Vian6g00523 528 PANTHER URIDINE KINASE 80 426 - -
Vian6g00523 528 CDD PRTases_typeI 374 489 IPR000836 -
Vian6g00523 528 SUPERFAMILY PRTase-like 300 517 IPR029057 -
Vian6g00523 528 Gene3D - 95 300 IPR027417 -
Vian6g00523 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 290 IPR027417 -
Vian6g00523 528 FunFam Uridine kinase 301 516 - -
Vian6g00523 528 PRINTS Uridine kinase signature 129 140 - -
Vian6g00523 528 PRINTS Uridine kinase signature 243 254 - -
Vian6g00523 528 PRINTS Uridine kinase signature 265 278 - -
Vian6g00523 528 PRINTS Uridine kinase signature 174 189 - -
Vian6g00523 528 PRINTS Uridine kinase signature 229 239 - -
Vian6g00523 528 PRINTS Uridine kinase signature 99 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00523 Vian-Chr6 20498061 20504346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00523 53 519 PRT Gene Family AT4G26510 83.156 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00523 K00876 - gmx:100792258 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00523 6 20498061 20504346 Vian7g01083 7 19045733 19052488 PCT