Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00509 ATGGAAACTGGGAGAGAGGATGAGATTGTGGACATGCCCATGTCACCCCCAGTAGTTGGTTCAAATATTAACAATGACTTTTGTCACCACAAAGAGTTCATGTCTCAGACATATATGCAGAATAAGTACTCAGAGATTGATATAGACACTGAAGATTCCAACTTTGATCAAAATCGCCCCCTCCCCATATTTCTCAAGTTTGAAGATGTGGAGTATAAGGTGAGAAATAGCCAAGCAGGCTCAGGTAACGTTGTGAAGTCAATGATGTCAAAGTTAACCACACACCTCACTGTGGAAGAAGATAGATACAAGAGAATTTTGAAGGGCATCACAGGAAGCATAGGCCCTGGTGAAATTCTTGCGTTGATGGGTCCTTCTGGCAGTGGGAAGACAACCTTGTTGAGAGTTATAGGAGGAAGACTGGTTGACAATGTAAAGGGAAAAGTAACTTACAATGATGTTCGTTTCAATCCAGCTCTCAAGAGGAGGATTGGGTTTGTGACACAAGAAGATGTGCTTTTCCCACAGTTAACAGTTGAAGAAACTTTAGTCTTCTCTGCACTTTTGAGGCTACCAGGCAGTATGAGCAAGCAGCAAAAGTATGCAAAAGTAGATACCACCATCAAGGAGCTAGGCCTAGAAAGATGTCGCCACACAAAAATAGCTGGAGGATATCTCAAAGGAATATCAGGAGGAGAAAGGAAGAGAACCTGCATTGGCTCTGAAATTCTTGTTGATCCTTCACTATTGCTACTTGATGAGCCAACTTCTGGCCTTGATTCCTCCTCAGCAAACAAACTCCTTCTCACTCTTCAAGGACTTGCCAAGGCTGGAAGGACCATAATCACAACAATACACCAGCCATCGAGTAGAATCTTTCACATGTTTGACAAACTACTTCTGATATCAGAAGGCTATCCTGTTTACTATGGAAAAGCTAAGGAAACAATAGAGTACTTCTCATTTTTGAGATTCACCCCTCAAATACCGATGAATCCTGCAGAGTTCTTGCTTGACTTGGCAACTGGACAAGTGAATGACATAAGTGTTCCACCAGATATCTTTCAAGATCAAGAATCTTCTGACCCTTCAAAAGTTGTTATTGAACTCAAATACAAATCTCTACTGGAGCCAAAAGAAAAAGAACAGAATCATAGAGTAGCAAGCACACCAGAACACCTTCAATTAGCAATTCAGGTTAAGATGGAGTGGACATCTAGTTGGTTGGACCAATTTATGATTCTCTCCAGGAGAACATATAAAGCAAGAAGAAAGGAATACTTTGATAAGCTAAGACTATTTCAAGCACTTGGGATTGCACTTGTGTTGGGGCTCCTTTGGTGGAAATCTTCAATCAATACTGAAGCTGGACTCAGAGATCAGGTTGGTTTAGCATTCTACATCTGTATATTCTGGACATCTTCATGCATTTTTGCAGCAGTCTATGTCTTTCCATTTGAAGAGTACTACTTGGTCAAAGAAAATAAAGCTGACATGTACAGATTAAGCGTATACTATGCATGTAGCACTCTATGTGACATGGTGGCCACCGTTTTCTATCCTACTTTTTTCATGCTCATCTTGTACTTCATGGCTGGCTTTAACAGAGCTGTTGCTTCCTTCCTTTTGACACTATTAACTATTCTGTTAATAGCTATAACAAGTCAAGGGGCAGGTGAAATGTTTGGAGCTGCAATTATGAGTGTTAAAAGAGCAGGTACCGCTGCTACTTTGCTACTAATGTTATTCCTTCTCACAGGTGGCTACTATGTCCAGCACATACCAAAGTTCATGAGATGGTTGAAGTATTTATCTTTCATGTACTATGGTTTTAGGCTTCTTCTGAAAGTGCAGTATTCTGGAGATCAGTTATATGATTGTGGAAGCATGGGAGGGTGCAGGACCCTGCAGAGTTCTCCAACATTTGACAGTGTAAACTTGAAGGGTGGATTGAAAGAAGTGTGGATTCTGCTAGCTATGGCATTAATCTTTCGGTTGTTGGCTTACTTGTGTCTTCGTGTAAGAATTGTTGGTAGAAAAAACTAA 2046 0.4071 METGREDEIVDMPMSPPVVGSNINNDFCHHKEFMSQTYMQNKYSEIDIDTEDSNFDQNRPLPIFLKFEDVEYKVRNSQAGSGNVVKSMMSKLTTHLTVEEDRYKRILKGITGSIGPGEILALMGPSGSGKTTLLRVIGGRLVDNVKGKVTYNDVRFNPALKRRIGFVTQEDVLFPQLTVEETLVFSALLRLPGSMSKQQKYAKVDTTIKELGLERCRHTKIAGGYLKGISGGERKRTCIGSEILVDPSLLLLDEPTSGLDSSSANKLLLTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKAKETIEYFSFLRFTPQIPMNPAEFLLDLATGQVNDISVPPDIFQDQESSDPSKVVIELKYKSLLEPKEKEQNHRVASTPEHLQLAIQVKMEWTSSWLDQFMILSRRTYKARRKEYFDKLRLFQALGIALVLGLLWWKSSINTEAGLRDQVGLAFYICIFWTSSCIFAAVYVFPFEEYYLVKENKADMYRLSVYYACSTLCDMVATVFYPTFFMLILYFMAGFNRAVASFLLTLLTILLIAITSQGAGEMFGAAIMSVKRAGTAATLLLMLFLLTGGYYVQHIPKFMRWLKYLSFMYYGFRLLLKVQYSGDQLYDCGSMGGCRTLQSSPTFDSVNLKGGLKEVWILLAMALIFRLLAYLCLRVRIVGRKN 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00509 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 50 669 - -
Vian6g00509 681 SMART AAA_5 116 307 IPR003593 GO:0016887
Vian6g00509 681 FunFam ABC transporter G family member 22 94 323 - -
Vian6g00509 681 Gene3D - 92 323 IPR027417 -
Vian6g00509 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 65 329 IPR003439 GO:0005524
Vian6g00509 681 Pfam ABC-2 type transporter 411 619 IPR013525 GO:0016020|GO:0140359
Vian6g00509 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 104 323 IPR027417 -
Vian6g00509 681 CDD ABCG_EPDR 83 311 - -
Vian6g00509 681 Pfam ABC-2 type transporter 286 346 IPR043926 GO:0140359
Vian6g00509 681 Pfam ABC transporter 107 257 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00509 Vian-Chr6 20200254 20203816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00509 105 290 Calmodulin-binding Proteins AT2G36910 29.665 1.31e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00509 K05681 - gmx:100806094 1152.5