Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00495 ATGTTCTTAAGAACAACCACCACCATCTTCATCATCTTCATCTTCATCATCTCAATCTGCTTATTTACAACAACAGCAACATCAACCCTTTCTCAGAACAACACAAACTTCTCCTTCTCCTTTCCCTCCTTCACCCTCCGCAACATAACCCTCCTCGGTGATTCCTTCCTTCGCAACGGCCTCGTCGGCCTCACCCTCTCCACCACTGTCCCCGCCTCTTCCTCCGGCACCCTCTTCTTCAACCATCCCATCACCACCACCCCTTCTTTCTCTCTCTCCACCAACTTCACCTTCTCCATCACCAACACCACCACCTCCGCCACCCCCTCCTCCACCTTCTCCTTCTTCCTCAACTCCTCCCACACCCTCCTCTCCCTCAATTTCCACCCCAACCAAAACCATCTCACCCTCGACCTCAGCGTCTCCTCAAACTCCTCGATTACCAACTCCACTTTGGTTGATCTCAGCACCGACATTCCGATCACTTCTTGGGTTGATTATCACCACACCGACAAGAAAAAGCTTCAAGTTTTCTTGAACTACTCTTCACCAGCCACTTCCAAGCCTCAAAACCCTGTCTTGAGCGTTGACCTTGACCTTTATGAGTACTTTAAGGACAGTCTCTACTTGGGGTTTTCTGGTTCCACCCAAGGAAGCACCGAGCTTATCCAAGTCATGAGTTGGAGTTTGGAGTTTGAGTCCAACTCGCACCCTCTGATCAATGGTTCTAGCAGCCCTTCGAATGTTGCTGTCGAGGGCATTCCTGTTTCTTCTAATTCCACTCAGGGTAGTAAGAATCGTGGTAAGAGATTCTTGTTCGGTCTTTGTGTTGCCATTGTTGGTCCTGCTTTTTTCTGCCTGGTGCTTGTGGTTTTGGGGTATGTTTCTTTTCTGAAGTGGCGTGGTTTGAGGAAGAAGAAAGGTTTTGGAACAGTGGGATGTTGTCCCAAAGAGTTTGGTTACAAGGAGGTGAAGTTGGCCACTAAGGGGTTTCATGCCTCAAGGGTAATTGGGAATGGGTCTTTTGGGACAGTGTACAAGGCTTTGTTTGAGTCTTCTGGGACAATAGCTGCAATCAAAAGGTCAAGACAGTACGATGGAAAAACTGAGTTTTTGGCAGAATTATCAATTATAGCTAGTTTGAGGCACAAGAATTTGGTTCAACTCCTAGGTGGGAGTCCTAACCGTGTGTTGAGTTGGGTTCATAGGGTTAACATTGCTGTTGGGTTGGCGTCAGTTTTGAGTTATCTGCATCAGGAGTGTGAGCAGAGGGTGATTCACAGGGACATCAAAACAGGGAACATATTGCTAGATGGAAGCATGAATCCAAGATTGGGTGATTTTGGGTTGGCCAAGCTTATGGACCATGACAAGAGTTGTGTGTGA 1386 0.4755 MFLRTTTTIFIIFIFIISICLFTTTATSTLSQNNTNFSFSFPSFTLRNITLLGDSFLRNGLVGLTLSTTVPASSSGTLFFNHPITTTPSFSLSTNFTFSITNTTTSATPSSTFSFFLNSSHTLLSLNFHPNQNHLTLDLSVSSNSSITNSTLVDLSTDIPITSWVDYHHTDKKKLQVFLNYSSPATSKPQNPVLSVDLDLYEYFKDSLYLGFSGSTQGSTELIQVMSWSLEFESNSHPLINGSSSPSNVAVEGIPVSSNSTQGSKNRGKRFLFGLCVAIVGPAFFCLVLVVLGYVSFLKWRGLRKKKGFGTVGCCPKEFGYKEVKLATKGFHASRVIGNGSFGTVYKALFESSGTIAAIKRSRQYDGKTEFLAELSIIASLRHKNLVQLLGGSPNRVLSWVHRVNIAVGLASVLSYLHQECEQRVIHRDIKTGNILLDGSMNPRLGDFGLAKLMDHDKSCV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00495 461 Gene3D - 126 273 - -
Vian6g00495 461 Gene3D Phosphorylase Kinase; domain 1 316 394 - -
Vian6g00495 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Vian6g00495 461 Pfam Protein kinase domain 404 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00495 461 Pfam Protein kinase domain 331 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00495 461 PANTHER - 48 457 - -
Vian6g00495 461 ProSiteProfiles Protein kinase domain profile. 331 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00495 461 SMART serkin_6 331 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00495 461 Gene3D Transferase(Phosphotransferase) domain 1 395 460 - -
Vian6g00495 461 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Vian6g00495 461 Gene3D - 34 125 - -
Vian6g00495 461 SUPERFAMILY Protein kinase-like (PK-like) 314 459 IPR011009 -
Vian6g00495 461 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 232 IPR013320 -
Vian6g00495 461 FunFam Os07g0541700 protein 381 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00495 Vian-Chr6 19991785 19993730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00495 11 461 Receptor kinase-like Gene Family AT5G55830 42.286 5.21e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vian6g00495 Pkinase 1.8e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00495 - - vum:124824905 654.055