Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00494 ATGGAGCATGAAGCTTCCTTCTTTCACATTGATCAACATGTCAAATCAACTTCTGGTTTAACAGTGCCTATGCAGCAAGAAAACAACTATGCGAACACAGAAACTGCAGCAGATGGAGTTGAAATCCCTAATTTGATTGGGAGAGATAAGAGCAAGATGCCAATTACAAATGTGACAAAAATCATGAGAAAATTTCTTCCAAACACTGCAAAAGTCTCTGATGGAGCCAAAGAGATGATTCAACTAAGTGCTACAAACTACATAACCCATGTAACAAGAAAAGCCAAGGAGAAGTGTCAGAGTGAGTACAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATTGAAAATGTGGGCTTTGATGAATACATTGGGCCTCTCAGTACTTTTCTCCAACGTTGTCGTCACTTTGAAGGAGCTAGTGCTAATGGGCCTGCTTTTGGGCCTACTTTTGGGCCTGACCTTAACCCTCTGGAAATGCCCCACCCTCCTCTACCACCTCCGCCACCACCTCCGCCACCCCCGGTGGTTTGTTCATCTGGGTTAGACTTTTCCATGCAGCAAAACACAATATTTGACCCAAATGATGTGAGCGGATACCTAGATGGTGTTGGTTGCTCAAACAATGCTTTTATCAACTTTGATCCTTTTTCTCTCTTCCAACAGGATCAGCTCTGA 681 0.4317 MEHEASFFHIDQHVKSTSGLTVPMQQENNYANTETAADGVEIPNLIGRDKSKMPITNVTKIMRKFLPNTAKVSDGAKEMIQLSATNYITHVTRKAKEKCQSEYRKIMNADDLLWAIENVGFDEYIGPLSTFLQRCRHFEGASANGPAFGPTFGPDLNPLEMPHPPLPPPPPPPPPPVVCSSGLDFSMQQNTIFDPNDVSGYLDGVGCSNNAFINFDPFSLFQQDQL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00494 226 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 45 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vian6g00494 226 MobiDBLite consensus disorder prediction 146 178 - -
Vian6g00494 226 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 116 IPR003958 -
Vian6g00494 226 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Vian6g00494 226 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Vian6g00494 226 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Vian6g00494 226 SUPERFAMILY Histone-fold 52 142 IPR009072 GO:0046982
Vian6g00494 226 Gene3D Histone, subunit A 45 145 IPR009072 GO:0046982
Vian6g00494 226 MobiDBLite consensus disorder prediction 157 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00494 Vian-Chr6 19984708 19990580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00494 6 171 CCAAT-HAP3 Transcription Factor Family AT1G21970 38.286 7.64e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vian6g00494 CBFD_NFYB_HMF 1.7e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00494 K08065 - nnu:104587883 110.923