Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00489 ATGGGAAGCAGCTACGTGGAAAGTTTGGGAGATGTGGAGGAACATGTCTTTCGTAGCCAGTACTCACCTGTCCCTATCCCTGACAATGTGACTTTGCCAGAATATGTGCTCCAAAATGCTGAGCTCTATGCTGACAAGGTCGCATTCGTGGATGCTGTAACTGGAAAACAGGTGACTTACGGTGATGTGGTGAGGGATGTAAAGAGGTTTTCAAAGGCCTTAAGATCTCTTGGTTTGAGGAAAGGGCATGTTGTCATTGTGTTGCTTCCAAATGTGGTTGAGTATGCCATTGTTGCTTTGGGGATAATGGCTGCTGGTGGGGTCTTTTCTGGGGCTAATCCAGCTTCTCATGTCTCAGAAATTAAGAAACAGAAAGAGTCTGCAGATGCCAAGATATTTGTCACAGATGCCACAAACTATCAAAAGGTGAAGGGTCTAGAGGTACCTGTTATTGTGGTAGGAGATGAAGTTGTTGAAGGTGGCATGAATTGGAAGAAGTTGATTGAAGCAGCAGAGAGAGGAGGTGGTGATTTTTCCAAGGAACCTGTTGAACAGAATGATCTTTGTGCCATGCCATTCTCATCAGGAACCACAGGAATGTCAAAGGGTGTGATGCTCACTCACAGAAATCTGGTGGCTAATCTCTGCTCTACACTCTTCAGTGTGACAAGGGAAATGGAGGGCAAGGTCACCACACTAGGCCTCATTCCCTTCTTTCACATCTATGGCATCACTGGAATATGTTGTGCCACTCTTAGGAGCAAAGGGAAAGTTGTGGTTATGGGAAGGTTTGAGTTGAAGAAGTTTCTCAATGCCTTGATCACACATGAGGTCACATTTGCACCCATTGTACCCCCTATCATTCTCAGCTTGGTCAAGAATCCCATAGTTGATGGATTTGACCTCACCAAGCTCAAACTCCAAGCTGTTATGACTGCAGCAGCACCACTTGCACCAGAACTTCTTAGTGCTTTTCAACACAAGTTCCCTGGTGTTTCTGTCCATGAGGCATATGGACTTACTGAGCATAGCTGCATCACACTCACTCTTGCAACAAAAGGATTGGGCAGTGTTCATAAAAATTCAGTGGGATTCATCCTCCCAAATTTGGAAGTCAAGTTTATTGATCCTGACACTGGTCGATCCCTTCCTAGGAACACACCCGGGGAACTTTGTGTGAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTGGATGAAACTGCACATACCATTGACAAGAATGGATGGCTTCACACAGGTGACATAGGATTCATAGATGATGAAGAAAATGTCTTCATCATTGATCGTATCAAAGAGTTGATCAAATACAAAGGTTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATTTTGCTGAGTCATTCATCAGTTGAAGATGCAGCTGTAGTGCCAATACCAGATGAAGATGCAGGGGAAATCCCAGGTGCAAGTGTGGTTTTGATCCCTGGTGCAAAGGAAAGTGAGGAGGACATAATGAACTATGTTGCCAACAATGCTGCACATTACAAGAAAGTGAGAGTGGTGCACTTTGTGAAAACCATACCAAAGTCACCCTCTGGAAAAATAATGAGGAGGCTCATCAAAGACAAGATGATTCAAAAGATAAAGACAACTTCCTCAACAAAATCTCAGAATGTCTAA 1665 0.4402 MGSSYVESLGDVEEHVFRSQYSPVPIPDNVTLPEYVLQNAELYADKVAFVDAVTGKQVTYGDVVRDVKRFSKALRSLGLRKGHVVIVLLPNVVEYAIVALGIMAAGGVFSGANPASHVSEIKKQKESADAKIFVTDATNYQKVKGLEVPVIVVGDEVVEGGMNWKKLIEAAERGGGDFSKEPVEQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVTREMEGKVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKKFLNALITHEVTFAPIVPPIILSLVKNPIVDGFDLTKLKLQAVMTAAAPLAPELLSAFQHKFPGVSVHEAYGLTEHSCITLTLATKGLGSVHKNSVGFILPNLEVKFIDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAHTIDKNGWLHTGDIGFIDDEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPIPDEDAGEIPGASVVLIPGAKESEEDIMNYVANNAAHYKKVRVVHFVKTIPKSPSGKIMRRLIKDKMIQKIKTTSSTKSQNV 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00489 554 Gene3D - 14 440 IPR042099 -
Vian6g00489 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 538 - -
Vian6g00489 554 ProSitePatterns Putative AMP-binding domain signature. 191 202 IPR020845 -
Vian6g00489 554 CDD 4CL 26 533 - -
Vian6g00489 554 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Vian6g00489 554 Gene3D - 441 544 IPR045851 -
Vian6g00489 554 Pfam AMP-binding enzyme 38 445 IPR000873 -
Vian6g00489 554 FunFam Long-chain-fatty-acid--CoA ligase FadD 18 440 - -
Vian6g00489 554 SUPERFAMILY Acetyl-CoA synthetase-like 21 543 - -
Vian6g00489 554 FunFam 4-coumarate--CoA ligase 2 441 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00489 Vian-Chr6 19824508 19827149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00489 14 540 Monolignol Biosynthesis Gene Families AT1G62940 72.212 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00489 K01904 - gmx:100811418 949.118