Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00459 ATGTACCATCCAACTCAATTTCTCCTCTGCTTCACTCCACCTAGTCTAGTTATTCGTGAGCTTGCCACACTTTCTGATTTGGCCTTGAAAATACATCAGAACGCCCGTGTTTGTTCAGAATTTTGTGCTGCTTGTGTTTACTGCTTCTTGTCTTGTTATTGCCTTGTTTCTGACGTAGGTTCCACTATTACGGCTTTATTTCTATGTTATATTGGATGTTCTGTTAGCAATATGGCCAAGCTTGCCCCTCTTGAAGACCCTCTTTTGGATGGTGACTCTACTTCAATCAACAATTCTGATCCTATTAAGACCAGAGGAAATGAATATTTGAACCGATATTCAAATGCTGGATTTTTCAGTATTCTTTCTTTCTCATGGATCACTCCATTAATAACACTGGGAAATGACAGGACTTTAAACCATGAAGACCTCCCACTTCTTGCTACTGCTGACAGTGCCTATGGGGTTTATCCAACTTTTAGAAGCAAACTCGAGTCAGAGTGTGGTAGTGTTAAAAATGTGACCACACTTAAGCTGGTGAAGGTATTATTCTTGTCGACATGGCAAGGGATCTTTTTATCAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACTGAGGCACTGGATGTTTAGGTTTCAGCAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGAAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAATCAAAGGAGCTTCGTAGTACTGGGGAAATCATCAACTTAATGACTGTCGATGCTGAAAGAATTGGCGAGTTCTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAGCTTGCTTTGGCCCTGTTAATTCTCTATAGAAGTGTGGGTGTTGCTTCGTTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGGTAAACCATCCTGTTGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAATTCAAAGATAAAAGAATGAAGGCTACGTCTGAGATACTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGATTAGAAAGAGTGAAGAGACATGGCTAAAGAAATTTCTTGCTGGCACAGCAACTATTCGATTCTTCTTCCACAACGCCCCAACTTCTATTGCAGTTGTTACGTTTGGTGCTTGTGTTCTTGTGGGGATACCACTTGAATCAGGGAAGGTCTTGTCTGCACTTGCAACATTCAGAATTCTTCAAATGCCCATATACAGTCTTCCTGACACAATTTCCATGATCGCACAAACTAAAGTTTCTCTGGATAGGATTTCATCATTTCTTAGACTAGACGAGCTGCAGACTGATATAGTACAGAAGCTTCCATGGGGTAGTTCTGACAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATGTTCTCCTAATGCAACATTGAAAAACATAAATCTCAATGTTTATCATGGTATGAGAGTAGCTGTATGTGGTACTATTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGAAAGATAGAAGACAACATACTATTTGGTAAAGAGATGGACAGTGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTCGGTGATCACACCATTATTGGGGAGAAAGGAATCAATTTGAGTGGTGGTCAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTATATCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCCCATCTCTTTAAGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTAAAGACAGGCACAGATTTTATGGAACTTGTAGATGCACACAGAGCAGCTTTGTCTTCAATTAAGTCTTTAGAGAGAAGATCAACATTTAAAGCATCAAGTGCCACCGATGAGAAAACAAATTCGTTAAGTGATTTTGAACTTGAGCAAAATGTGGAAGACATACATGTTGAAAATGATAAGCCAAACGACACAGTTGAGCCCAAAGGACAACTCGTTCAAGAAGAAGAACGAGAAAAGGGTAGAGTTGGGTTTAAAGTGTACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCTCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCAGTTTCAGCAACAGCAGAAACTAATATTGGATGCTTTAAACTCATGGTTGTCTACGTCGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCCACATCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTACTCTTCGATAAAATGCATTTGTGTATTTTTCGAGCACCAATATCATTTTTTGATTCCACCCCAAGTGGTCGAATCCTCAACAGAGCTTCAATAGACCAAAGCTCACTAGATATGTACATTGCAAACATATTATGGGCAATTACCCTCAATCTGGTACAACTGTTGGGAAATGTTTATGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATTCCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTATTCTGCATCTGCAAGAGAATTGGCACGATTGGTTGGTACATGCCAAGCTCCGGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGACATAAACATGAAGTTGATAGATAGATATTCCCAACCCAAACTATACAGTGCTACTGCAATTGAATGGCTGAATTTCCGATTGGATATTTTATCCACTCTCATATTTGTCTTCTGTTTGGTATTCTTGGTATCTTTCCCAAATTCAATGACTGCTCCTGCAAACAACTTCATTCATCTTTCGTTCCAATTTGTTTTTTTCCAAGGCATTGCGGGATTGGCTGTGACATATGGACTTAATCTAAATACTGTGCAAACTAGAGTAATCTGGTTTCTTTGTGACTTGGAGAAAAATATTATATCTGTTGAGAGAATACTCCAGTACACATCTCTCCCAAGTGAAGCTCCTCTTGTGATTGAAGACAACCAACCGGATTGTTCTTGGCCATCATTTGGAGAGGTTCATATCTGGAATTTGCAGGTTCGATATGCTCCTCATTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTTGTGCAAACACTTCTCCGCCTTATTGAACCTATGGATGGAAAAATATTAATAGATAACATTAACATATCTTTGATGGGAATTCATGATTTGCGGTCTAGACTCAGCATTATTCCTCAAGATCCAACGATGTTTGAAGGGACTGTAAGAACCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGATGTAAGGAAAAAAGAAGGGAAGCTGGACTCCATAGTGACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTCTATTCTTAAATCAAGGGTTGATAGAAGAATATGATTCGCCTAAGAAACTTCTTAAGGACAAATCTTCATCTCTAGCTCAACTAGTTGCAGAATACACTAGGAGGTCAAACTCTGGTTTTGGAAATTAA 4005 0.3963 MYHPTQFLLCFTPPSLVIRELATLSDLALKIHQNARVCSEFCAACVYCFLSCYCLVSDVGSTITALFLCYIGCSVSNMAKLAPLEDPLLDGDSTSINNSDPIKTRGNEYLNRYSNAGFFSILSFSWITPLITLGNDRTLNHEDLPLLATADSAYGVYPTFRSKLESECGSVKNVTTLKLVKVLFLSTWQGIFLSGYVLAATFVAAKLVECLSLRHWMFRFQQVGVRMQSMLVEMIYAKGLTLSCQSKELRSTGEIINLMTVDAERIGEFCWYMHDPWMCVLQLALALLILYRSVGVASLAALAATVIVMLVNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLKKFLAGTATIRFFFHNAPTSIAVVTFGACVLVGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRISSFLRLDELQTDIVQKLPWGSSDKAIELVDGNFSWDLCSPNATLKNINLNVYHGMRVAVCGTIGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDSEKYEKVLEACSLTKDLEVLPFGDHTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKVMREGRITQSGKYNDILKTGTDFMELVDAHRAALSSIKSLERRSTFKASSATDEKTNSLSDFELEQNVEDIHVENDKPNDTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVSATAETNIGCFKLMVVYVALAIGSSIFTFATSFLAVIAGYKTATVLFDKMHLCIFRAPISFFDSTPSGRILNRASIDQSSLDMYIANILWAITLNLVQLLGNVYVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTLIFVFCLVFLVSFPNSMTAPANNFIHLSFQFVFFQGIAGLAVTYGLNLNTVQTRVIWFLCDLEKNIISVERILQYTSLPSEAPLVIEDNQPDCSWPSFGEVHIWNLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKSTLVQTLLRLIEPMDGKILIDNINISLMGIHDLRSRLSIIPQDPTMFEGTVRTNLDPLEEYTDEQIWEALDMCQLGDDVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNSGFGN 1334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00459 1334 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 756 1051 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00459 1334 ProSitePatterns ABC transporters family signature. 597 611 IPR017871 GO:0005524|GO:0016887
Vian6g00459 1334 FunFam ABC transporter C family member 10 171 454 - -
Vian6g00459 1334 CDD ABCC_MRP_domain2 1086 1306 - -
Vian6g00459 1334 Pfam ABC transporter 490 624 IPR003439 GO:0005524
Vian6g00459 1334 SUPERFAMILY ABC transporter transmembrane region 187 451 IPR036640 GO:0005524|GO:0016020
Vian6g00459 1334 Gene3D - 455 687 IPR027417 -
Vian6g00459 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 469 665 IPR027417 -
Vian6g00459 1334 CDD ABC_6TM_ABCC_D2 754 1063 IPR044726 GO:0140359
Vian6g00459 1334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1088 1322 IPR003439 GO:0005524
Vian6g00459 1334 CDD ABCC_MRP_domain1 472 637 - -
Vian6g00459 1334 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 113 1323 - -
Vian6g00459 1334 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 198 438 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00459 1334 Pfam ABC transporter transmembrane region 756 1021 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00459 1334 Pfam ABC transporter transmembrane region 188 425 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00459 1334 Pfam ABC transporter 1106 1253 IPR003439 GO:0005524
Vian6g00459 1334 Gene3D - 1071 1324 IPR027417 -
Vian6g00459 1334 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 472 704 IPR003439 GO:0005524
Vian6g00459 1334 FunFam ABC transporter C family member 3 1071 1323 - -
Vian6g00459 1334 Gene3D ABC transporter type 1, transmembrane domain 717 1069 IPR036640 GO:0005524|GO:0016020
Vian6g00459 1334 Gene3D ABC transporter type 1, transmembrane domain 109 454 IPR036640 GO:0005524|GO:0016020
Vian6g00459 1334 SUPERFAMILY ABC transporter transmembrane region 754 1070 IPR036640 GO:0005524|GO:0016020
Vian6g00459 1334 FunFam ABC transporter C family member 5 717 1069 - -
Vian6g00459 1334 FunFam ABC transporter C family member 5 457 639 - -
Vian6g00459 1334 SMART AAA_5 499 679 IPR003593 GO:0016887
Vian6g00459 1334 SMART AAA_5 1114 1299 IPR003593 GO:0016887
Vian6g00459 1334 CDD ABC_6TM_ABCC_D1 182 446 IPR044746 GO:0140359
Vian6g00459 1334 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1080 1313 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00459 Vian-Chr6 19117015 19130347 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00459 258 881 Calmodulin-binding Proteins AT2G36910 22.161 9.13e-19 90.9