Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00457 ATGATGTTGTTGGTCTCAACACTCGGTTCTCTTGCTCTTAGACATTTTGGCAGTAGCCTTCTGACATATTTAGTGAAGCCGGTTTTCTTGCATGGCTTCTCTTCTTTCCTTCATCTACTGTTATTGGTGGTGCTTTTAGTGTCACTGATGTGGAGGAAAGTCGCAGTTGGAACCAGAGAAAGTTCCACAAAGAACATTACCTTTGCAAAGGCTCCACTTTGTTCCTTTCTTGTTTCGGCTATCAATTTTCTACTATTTTTGGTTGATTACTTTTGTTGGTATAAAAATGGTTGGTCAGAAGAAAAGCTTGCGACCCTTTTGGATTTTCTGCTCAAAACAGTTGCTTGGGGTGTTGCTGGTGTTTGCTTGCACATGGAACTCTTCATTTCAAGGGAAAGAAGATTACCATTCTTCTTCAGAGCTTGGTTGGTCCTTTACCTCGTTGTTTCCGGCTATTGCTTTATAGTGAACTTTGCTCTCTATGAAGAAAAGCATTCTGCTTTGCCCCTTCAGAGCTTAGTTTCTGATGTTTTCTCTGTTTTTGTGTGTTTATTCTTCTTTTACTTGGAGTTGTTTGTAAAAAGTCAGGGTGGTGTAGGAGATAGTACTTTACAAGAATCTCTTTTGGATGCTGACTCAAGAGATGATGTGTTTGAGGCAAAAGAGACCAAGGGGAGTGACACTGTTACACCTTACTCTAATGCTGGAATATTTGGCCTTCTTACCTTCTCTTGGATTGGTCCTCTGATTACTGTTGGAAGGAAGAAGCCTTTGGACCTTGAGGATGTTCCCCAACTTGACAAAAGAGACAGTTTAATTGGAGCTTTTCCAACTTTTAGGGATAGGCTTGAGGCACAATGTGAAGCTATTACCACAGTGGACACACTTATGTTAGTGAAGTCATTAGTATTCTCAAGCTGGAAAGAAATTATTTTCACAGCCATCCTTGCATTGCTAAACACATTGGCTTCTTTTGTTGGTCCCTATCTTATTGATGGTTTTGTTCAATTCCTTAACGGACAACGAAAACTTGAGCATGAGGGCCTTATATTGGTGACTGCATTTTTTGTGGCAAAGCTTTTGGAGTGCCTCACAAGGAGGCACTGGTTATTTAGGTTGCAGCAGGTTGGAATACGAATGCGAGCACTTCTTGTGACAATGATATATAATAAAATTTTGAATCTTTCATGTCAATCCAAGCACGGCCACACTACTGGGGAAATAATCAACTTCATGACCGTTGATGCAGAAAAAGTTGGTGAGTTCAGTTGGCATCTACATGATCTGTGGTTAGTAGTTCTACAGGTTATAGTAGCCTTGTTGATTTTGTATAGAAATCTCGGGCTTGCTTCAATTTCTGGCCTTGTTGCAATTCTCATAGTAATGTGGGCAAACATTCCCTTGGGTTCAATCCAAGAGAAGTTTCATAACAAGTTGATGGAGTCAAAAGATGCACGAATGAAAACAACTTCTGAGATTTTGAGAAACATGCGGATTCTCAAACTACAAGGATGGGAAATGAAGTTTTTGTCAAACATAACCCAACTCAGAAAGATCGAGCAGGACTGGTTAAAAAAAGTTATATACTCGTTAGTCATGATCATATTTGTGTTTTGGTGTGCCCCAGCATTTGTGTCAGTGGTTACTTTTGGTACTTCTATACTTGTAGGAATCCCCCTTGAGTCAGGGAAGATACTGTCTACACTTGCCACATTCCAGATTCTCCAAGAACCCATTTATAATCTTCCAGAGACAATATCAATGATGGCACAGACTAAGGTTTCTCTTGACAGGATTGCATCTTTCCTTCGTCTGGATGAGATTCTATTTGATGTTGTGGAGAAGCTTCCACAAGGTAGTTCTAATGCAGCAATTGAAGTAGTTGATGGGAATTTCTCTTGGGACTCATTTACATTGCAAAACATAAATCTCAGAGTTTTTCATGGCATGAGGGTTGCTATTTGCGGTAGTGTTGGATCAGGCAAGTCTACTTTTCTTTCTTGTATATTAGGAGAAGTACCCAAGAAATCAGGGATTTTGAAGGTGTGTGGAACAAAGGCCTATGTAGCTCAGTCACCGTGGATACAAAGTAGCACGATAGAGGATAATATATTGTTTGGTAAGGACATGGAAAGGCAAAGGTATGAGAAGGTTCTTGAAGCTTGTTGCCTAAAGAAGGATCTAGATGTTTTGTCATTTGGAGATCAGACTATAATAGGAGAGAGGGGGATAAATTTGAGTGGTGGACAGAAACAGAGAATACAAATTGCTCGTGCTCTGTATCACGATGCTGATATATATCTATTGGATGATGTGTTTAGTGCTGTGGATGCTCACACAGGATCTCATCTTTTTCAGGAATGCTTACTCAACCATTTAAGTTCAAAGACAGTGGTTTACGTCACTCATCAAGTAGAGTTCTTACCTGCCGCTGACCTTATTTTGGTCATGAAAGATGGAAAGATTATTCAAAGTGGAAAATACGATTATCTGCTCAAATCAGGCACTGATTTTATGGAACTTGTTGGTGCTCATAAAGAAGCTTTGTCTGCACTTGATTCAATAGATGGAGGAAAAGCGTCTGCTATAACAAGTACATCAAAAGAGGATGTAAGATTCGTTCTTTCTCAAGGCATTGAAGAAAAGGAAGTAATGAAAAATGAGAAAAATGGTGGAAAAGATAACAAACATGATCCAAAAGGCCAACTTATCCAAGAAGAAGAAAGAGAGAAAGGTAGAGTAGGGTTTGCAGTTTATTGGAAATATGTAACAACAACATATGGGGGAGCACTTGTACCACTCATATTGTGTGCTGAAATTTTGTTTCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCTCATCTGATGCTGAGCCAACTGTTGGAGAAAGTGCCCTTATATTTGTATATGTAGCTTTGGCCATAGGAAGTTCTATCTGTGTCCTTGCTAGAGCAACTCTTGTTGCCACAACTGGTTATAAGACAGCTACTTCACTCTTCAACAACATGCATCTCTGCATTTTCCGTGCTCCAATGTCATTTTTCGATGCCACTCCAAGTGGGAGAATCCTTAATAGGGCTTCTACTGATCAAAGTGCAGTGGATACAGACATTCCTTTTCAAACTGGATCGTTAGCTTCCTCTATAGTCCATCTTCTCGGAATTGTAGCAGTAATGTCTCAAGTTGCATGGCAGGTTTTCATTGTCTTTATTCCTATCACAGCAATCAACATTTGGTATCAGCAATATTATATACCATCAGCCCGGGAACTATCACGTTTAGTTGGGGTATGCAACGCTCCTGTCATTCAGCACTTTTCTGAAACAATATCAGGTGCATCAACCATCAGGAGCTTTGATCAGGTGCCAAGATTTCAGCAAACAAATATGAAACTGATGGATGGATATTCTCGCCCCAAGTTCAACAATGCTGCTGCTATGGAATGGTTGTGCTTCCGATTAGATATCTTGTCTTCCATCACATTTGCCTTTTGCTTGATATTCTTGATATCTATTCCACATGGATTCATAGATTCAGGTATTGCTGGTTTAGCTGTAACCTATGGCCTTAATCTGAACATTACACAATCATGGATGATATGGGAACTTTGCAGCATGGAGAACAAAATTATATCAGTGGAAAGAATTCTTCATTACTTGATGAAGGTACGTTACGCTCCACATATGCCATTTGTGTTGCATGGCTTTACATGCACGTTCCATGGAGGACTTAAAACCGGAATTGTTGGGAGAACAGGAAGTGGTAAATCAACTCTCATACAAACACTATTCCGAATTGTTGAGCCTACTGTTGGGAGAATTATGATTGATGGCATCAACATCTCATCCATTGGACTTCATGATTTGAGGTCTAGACTGAGCATTATCCCTCAGGATCCGACCATGTTTGAAGGTACTGTGAGAAGTAATATGGACCCACTTGAAGAGTACACAGATGAACAAATTTGGGAGGTTTGTCTCATAACTTTGTTGAACATAAATCTACATGAATTTAGTTTAAACATATTCAGAATGGATGCTGCAGTCTGTGAGGATGGAGAAAATTGGAGTATGGGTCAGAGGCAATTGGTATGTCTTGGTAGAGTACTGCTTAAGAAGAGTAAGGTCTTGGTGCTAGATGAAGCTACTGCATCAGTTGACACAGCTACAGATAATTTGATTCAGCAAACTCTTAGGCAATACTTTTCTGATTGCACAGTCATTACAATTGCCCATAGAATAACTTCTGTCATTGATAGTGATATGATTCTACTACTTAATCAAGGACTTATTGAGGAGTATGATTCCCCAGCAAGGTTGCTAGAGGACAACTTTTCTTCTTTTGCTCAACTTGTGGCAGAGTACACCACAAGGTCCAATTCCAGACAGAAACCCTTGTGCTACCACCGTGAAACCCTAGTTGCCCCCGCTGCCGCAGAACGAAACATGCCACCACCAAACCCTCACGCCAGTGTGTCCTTCATCCACGTCTTCTTTGCAAAGAGCAAAAGCCTAGAACAAGAGCTTTTTCTTCGTGCATCACTGATCAAACGTGTTGTGCCACCATGGGTTGTCGCGAGTCAGAGTGTAGAATCATGA 4617 0.4029 MMLLVSTLGSLALRHFGSSLLTYLVKPVFLHGFSSFLHLLLLVVLLVSLMWRKVAVGTRESSTKNITFAKAPLCSFLVSAINFLLFLVDYFCWYKNGWSEEKLATLLDFLLKTVAWGVAGVCLHMELFISRERRLPFFFRAWLVLYLVVSGYCFIVNFALYEEKHSALPLQSLVSDVFSVFVCLFFFYLELFVKSQGGVGDSTLQESLLDADSRDDVFEAKETKGSDTVTPYSNAGIFGLLTFSWIGPLITVGRKKPLDLEDVPQLDKRDSLIGAFPTFRDRLEAQCEAITTVDTLMLVKSLVFSSWKEIIFTAILALLNTLASFVGPYLIDGFVQFLNGQRKLEHEGLILVTAFFVAKLLECLTRRHWLFRLQQVGIRMRALLVTMIYNKILNLSCQSKHGHTTGEIINFMTVDAEKVGEFSWHLHDLWLVVLQVIVALLILYRNLGLASISGLVAILIVMWANIPLGSIQEKFHNKLMESKDARMKTTSEILRNMRILKLQGWEMKFLSNITQLRKIEQDWLKKVIYSLVMIIFVFWCAPAFVSVVTFGTSILVGIPLESGKILSTLATFQILQEPIYNLPETISMMAQTKVSLDRIASFLRLDEILFDVVEKLPQGSSNAAIEVVDGNFSWDSFTLQNINLRVFHGMRVAICGSVGSGKSTFLSCILGEVPKKSGILKVCGTKAYVAQSPWIQSSTIEDNILFGKDMERQRYEKVLEACCLKKDLDVLSFGDQTIIGERGINLSGGQKQRIQIARALYHDADIYLLDDVFSAVDAHTGSHLFQECLLNHLSSKTVVYVTHQVEFLPAADLILVMKDGKIIQSGKYDYLLKSGTDFMELVGAHKEALSALDSIDGGKASAITSTSKEDVRFVLSQGIEEKEVMKNEKNGGKDNKHDPKGQLIQEEEREKGRVGFAVYWKYVTTTYGGALVPLILCAEILFQVLQIGSNYWMAWATPISSDAEPTVGESALIFVYVALAIGSSICVLARATLVATTGYKTATSLFNNMHLCIFRAPMSFFDATPSGRILNRASTDQSAVDTDIPFQTGSLASSIVHLLGIVAVMSQVAWQVFIVFIPITAINIWYQQYYIPSARELSRLVGVCNAPVIQHFSETISGASTIRSFDQVPRFQQTNMKLMDGYSRPKFNNAAAMEWLCFRLDILSSITFAFCLIFLISIPHGFIDSGIAGLAVTYGLNLNITQSWMIWELCSMENKIISVERILHYLMKVRYAPHMPFVLHGFTCTFHGGLKTGIVGRTGSGKSTLIQTLFRIVEPTVGRIMIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNMDPLEEYTDEQIWEVCLITLLNINLHEFSLNIFRMDAAVCEDGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQYFSDCTVITIAHRITSVIDSDMILLLNQGLIEEYDSPARLLEDNFSSFAQLVAEYTTRSNSRQKPLCYHRETLVAPAAAERNMPPPNPHASVSFIHVFFAKSKSLEQELFLRASLIKRVVPPWVVASQSVES 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00457 1538 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 591 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00457 1538 Gene3D - 1228 1474 IPR027417 -
Vian6g00457 1538 CDD ABCC_MRP_domain1 625 821 - -
Vian6g00457 1538 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1217 1459 IPR003439 GO:0005524
Vian6g00457 1538 FunFam ABC transporter C family member 10 294 607 - -
Vian6g00457 1538 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524|GO:0016887
Vian6g00457 1538 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 1463 - -
Vian6g00457 1538 SUPERFAMILY ABC transporter transmembrane region 932 1226 IPR036640 GO:0005524|GO:0016020
Vian6g00457 1538 SUPERFAMILY ABC transporter transmembrane region 299 599 IPR036640 GO:0005524|GO:0016020
Vian6g00457 1538 Pfam ABC transporter transmembrane region 935 1176 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00457 1538 Pfam ABC transporter transmembrane region 311 578 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00457 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 843 IPR027417 -
Vian6g00457 1538 Coils Coil 1536 1538 - -
Vian6g00457 1538 CDD ABCC_MRP_domain2 1229 1443 - -
Vian6g00457 1538 CDD ABC_6TM_ABCC_D2 932 1225 IPR044726 GO:0140359
Vian6g00457 1538 CDD ABC_6TM_ABCC_D1 312 599 IPR044746 GO:0140359
Vian6g00457 1538 FunFam ABC transporter C family member 5 610 853 - -
Vian6g00457 1538 FunFam Multidrug resistance-associated protein member 4 1212 1461 - -
Vian6g00457 1538 SMART AAA_5 1248 1436 IPR003593 GO:0016887
Vian6g00457 1538 SMART AAA_5 648 821 IPR003593 GO:0016887
Vian6g00457 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1228 1450 IPR027417 -
Vian6g00457 1538 Gene3D - 611 855 IPR027417 -
Vian6g00457 1538 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 934 1214 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00457 1538 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 603 844 IPR003439 GO:0005524
Vian6g00457 1538 Gene3D ABC transporter type 1, transmembrane domain 894 1227 IPR036640 GO:0005524|GO:0016020
Vian6g00457 1538 Gene3D ABC transporter type 1, transmembrane domain 285 607 IPR036640 GO:0005524|GO:0016020
Vian6g00457 1538 Pfam ABC transporter 639 772 IPR003439 GO:0005524
Vian6g00457 1538 Pfam ABC transporter 1240 1390 IPR003439 GO:0005524
Vian6g00457 1538 FunFam ABC transporter C family member 5 895 1230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00457 Vian-Chr6 19033960 19040200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00457 625 871 Calmodulin-binding Proteins AT2G36910 31.365 5.22e-25 111