Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00455 ATGGCCAAGCTTGCCCCTCTTGAAGACCCTCTTTTGGATACTGACTCTACTTCAATCAACAATCCTGATCCTATTAAGACCAGAGGAAATGAAAATTTGACCCGATATTCAAATGCTGGATTTTTCAGTATTCTTTCTTTCTCATGGATCACTCCATTAATAACACTGGGAAATGACAGGACTTTAAACCATGAAGACCTCCCACTTCTTGCTACTGCTGACAGTGCCTATGGGGTTTATCCAACTTTTAGAAGAAAACTCGAGTCAGAGTGTGGTAGTGTTAAAAATGTGACCACACTTAAGCTGGTGAAGGTATTATTCTTGTCGACATGGCAAGGGATCTTTTTATCAGGTTTATTTGCATTCCTCTATGCCTGTGCTTCTTACGTTGGACCCTTTCTTATTGACATCCTTGTTCGATACCTCAATGGAGAATACATGTTTAAAAATGAAGGCTATGTTTTGGCTGCGACTTTTGTTGCTGCAAAGCTTGTGGAGTGTCTTTCACAGAGGCACTGGATGTTTAGGTTTCAGCAGGTTGGGGTTAGAATGCAATCCATGTTGGTGGAAATGATCTATGCTAAAGGTTTGACTCTTTCGTGTCAATCAAAGGAGCTTCGTAGTACTGGGGAAATCATCAACTTAATAACTGTCGATGCTGAAAGAATTGGCGAATTCTGTTGGTACATGCATGATCCATGGATGTGTGTTTTGCAGCTTGCTTTGGCCCTGTTAATTCTCTATAGAAGTATGGGTGTTGCTTCGTTAGCTGCTCTTGCTGCCACTGTAATTGTGATGTTGGTAAACCATCCTGTTGCATCATTGCAAGAAAAGTTCCAAGGCAAGATAATGGAATTCAAAGATAAAAGAATGAAGGCTACGTCTGAGATACTTAAGAATATGAGGATTCTAAAACTGCAAGCATGGGAGATGAAGTTCTTATCAAAGATTATTCAGATTAGAAAGAGTGAAGAGACATGGCTAAGGAAATTTCTTGCTGGCACAGCAACTATTCGATTCTTCTTCCACAACGCCCCAACTTTTATTGCAGTTGTTACGTTTGGTGCTTGTGTTCTTGTGGGGATACCACTTGAATCAGGGAAGGTCTTGTCTGCACTTGCAACATTCAGAATTCTTCAAATGCCCATCTACAGTCTTCCTGACACAATTTCTATGATTGCACAAACTAAAGTTTCTCTGGATAGGATTGCATCATTTCTTAGACTAGATGAGTTGCAGACTGATATAGTACAGAAGCTTCCGTGGGGTAGTTCTGACAAGGCAATTGAATTAGTGGATGGAAACTTCTCATGGGATTTATGTTCTCCTAATGCAACATTGAAAAACATAAATCTCAATGTTTATCATGGTATGAGAGTAGCTGTATGTGGTACTGTTGGATCAGGCAAGTCTAGTTTACTTTCTTGTATTATAGGGGAAGTACCAAAGATATCTGGGACATTGAAAATATGTGGAACAAAGGCTTATGTTTCTCAATCGCCATGGATACAGAGTGGAAAGATAGAAGACAACATACTATTTGGTAAAGAGATGGACATTGAAAAGTATGAGAAGGTGCTAGAAGCATGTTCCTTGACAAAAGACCTTGAGGTTCTACCATTCGGTGATCACACCATTATTGGGGAGAAAGGAATCAATTTGAGTGGTGGTCAGAAGCAAAGAGTGCAAATAGCTCGTGCTCTATATCAAGATGCTGATATATATCTTTTTGATGATCCCTTCAGTGCCGTTGATGCTCATACAGGATCCCATCTCTTTAAGGAATGCTTGCTTGGCCTTTTAAAATCAAAAACTGTGATATACGTAACACATCAAGTAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAGAGAAGGAAGGATAACTCAATCAGGAAAATACAATGACATTCTCAAGACAGGCACAGATTTTATGGAACTTGTAGGTGCACACAGAGCAGCTTTGTCTTCAATTAAGTCTTTAGAGAGAAGACCAACATTTAAAGCATCAAGTACCACCGATGAGAAAACAAATTCGTTAAGTGATTTTGAACTTGAGCAAAATGTGGAAGACATACGTGTTGAAAATGAAAAGCCAAACGGCACAGTTGAGCCCAAAGGACAACTCGTTCAAGAAGAAGAACGAGAAAAGGGTAGAGTTGGGTTTAAAGTGTACTGGAAATACATCACAACAGCTTATGGAGGAGCTCTTGTGCCCTTCATATTACTTTCGCAGATACTCACTGTGGGTTTTCAGATTGCAAGCAATTATTGGATGACTGTAGCAACTCCTGTTACAGCAACAGCAGAAACTGATATTGGAAGCTTTACACTCATGGTTGTCTATGTCGCTTTGGCAATTGGAAGTTCCATTTTCACCTTTGCCAGATCATTTCTTGCTGTGATAGCTGGATACAAGACAGCCACTGTACTCTTCAATAAAATGCATTTGTGTATTTTTCGAGCACCAATTTCATTTTTTGATTCCACCCCAAGTGGTCGAATACTCAACAGAGCTTCAATAGACCAAAGCTCGCTAGATATGTATATTGCAAACATATTATGGGCAATTACCCTCAATCTGGTTCAACTATTGGGAAATGTTATTGTGATGTCTCAAGCTGCATGGCAGGTGTTCATAGTATTGATACCTGTCATGGCAGCTAGCATATGGTACCAGCGGTACTATTCTGCATCTGCAAGAGAATTGGCACGATTGGTTGGTACATGCCAAGCTCCGGTTATACAACATTTTTCTGAAACAATTTCTGGATCAACAACCATAAGAAGTTTTGAACAAGAATCAAGATTTAATGACATAAACATGAAGTTGATAGACAGATATTCCCAACCCAAACTTTACAGCGCTACTGCAATTGAATGGCTAAATTTCCGATTGGATATTTTATCCACTGTCATATTTGCCTTCTGTTTGGTATTCTTGGTATCTTTCCCAAATTCAATGACTGCTCCTGTAATCTGGTTTCTTTGCGACTTGGAGAACAAAATTATATCAGTTGAGAGAATACTCCAGTACACATCCCTCCCAAGTGAAGCTCCTCTTGTGAGTAAAGATAACCAACCGGATTGTTCTTGGCCATCATTTGGAGAGGTTCATATCTGGAATTTGCAGGTTCGATATGCTCCTCATTTGCCTATTGTTTTACGAGGTCTTACTTGCACTTTTACTGCTGGATCAAAAACTGGTATTGTGGGAAGAACAGGAAGTGGAAAATCAACTCTTGTGCAAACACTTCTCCGCCTTATTGAACCTATGGATGGAAAAATATTAATAGATAACATTAACATATCTTTGATTGGAATTCATGATTTGCGGTCTAGAGTCAGCATTATTCCTCAAGATCCAACGATGTTTGAAGGGACTATAAGAACCAACCTGGATCCACTGGAAGAGTACACAGATGAACAGATTTGGGAGGCTCTAGATATGTGCCAACTTGGAGATGATGTAAGGAAAAAAGAAGGGAAGCTGGACTCCATAGTGACTGAGAATGGAGAAAATTGGAGTATGGGTCAAAGGCAGTTGGTCTGCCTAGGCCGTGTTCTACTGAAGAAAAGCAAGATCTTGGTGCTTGATGAAGCTACTGCATCTGTTGACACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAACATTTTTCAGAATGCACAGTCATTACCATTGCTCATAGGATAACTTCTATCATCGACAGTGACATGGTTCTATTCTTAAATCAAGGGTTGATAGAAGAATATGATTCGCCTAAGAAACTTCTTAAGGACAAATCTTCATCTCTAGCGCAACTAGTTGCAGAATACACTAGGAGGTCAAACTCTGGTTTTGGAAATTAA 3861 0.3955 MAKLAPLEDPLLDTDSTSINNPDPIKTRGNENLTRYSNAGFFSILSFSWITPLITLGNDRTLNHEDLPLLATADSAYGVYPTFRRKLESECGSVKNVTTLKLVKVLFLSTWQGIFLSGLFAFLYACASYVGPFLIDILVRYLNGEYMFKNEGYVLAATFVAAKLVECLSQRHWMFRFQQVGVRMQSMLVEMIYAKGLTLSCQSKELRSTGEIINLITVDAERIGEFCWYMHDPWMCVLQLALALLILYRSMGVASLAALAATVIVMLVNHPVASLQEKFQGKIMEFKDKRMKATSEILKNMRILKLQAWEMKFLSKIIQIRKSEETWLRKFLAGTATIRFFFHNAPTFIAVVTFGACVLVGIPLESGKVLSALATFRILQMPIYSLPDTISMIAQTKVSLDRIASFLRLDELQTDIVQKLPWGSSDKAIELVDGNFSWDLCSPNATLKNINLNVYHGMRVAVCGTVGSGKSSLLSCIIGEVPKISGTLKICGTKAYVSQSPWIQSGKIEDNILFGKEMDIEKYEKVLEACSLTKDLEVLPFGDHTIIGEKGINLSGGQKQRVQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLKSKTVIYVTHQVEFLPDADLILVMREGRITQSGKYNDILKTGTDFMELVGAHRAALSSIKSLERRPTFKASSTTDEKTNSLSDFELEQNVEDIRVENEKPNGTVEPKGQLVQEEEREKGRVGFKVYWKYITTAYGGALVPFILLSQILTVGFQIASNYWMTVATPVTATAETDIGSFTLMVVYVALAIGSSIFTFARSFLAVIAGYKTATVLFNKMHLCIFRAPISFFDSTPSGRILNRASIDQSSLDMYIANILWAITLNLVQLLGNVIVMSQAAWQVFIVLIPVMAASIWYQRYYSASARELARLVGTCQAPVIQHFSETISGSTTIRSFEQESRFNDINMKLIDRYSQPKLYSATAIEWLNFRLDILSTVIFAFCLVFLVSFPNSMTAPVIWFLCDLENKIISVERILQYTSLPSEAPLVSKDNQPDCSWPSFGEVHIWNLQVRYAPHLPIVLRGLTCTFTAGSKTGIVGRTGSGKSTLVQTLLRLIEPMDGKILIDNINISLIGIHDLRSRVSIIPQDPTMFEGTIRTNLDPLEEYTDEQIWEALDMCQLGDDVRKKEGKLDSIVTENGENWSMGQRQLVCLGRVLLKKSKILVLDEATASVDTATDNIIQQTVKQHFSECTVITIAHRITSIIDSDMVLFLNQGLIEEYDSPKKLLKDKSSSLAQLVAEYTRRSNSGFGN 1286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00455 1286 CDD ABCC_MRP_domain1 429 629 - -
Vian6g00455 1286 CDD ABC_6TM_ABCC_D1 116 403 IPR044746 GO:0140359
Vian6g00455 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 742 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00455 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 429 652 IPR003439 GO:0005524
Vian6g00455 1286 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 37 1275 - -
Vian6g00455 1286 FunFam ABC transporter C family member 10 98 411 - -
Vian6g00455 1286 FunFam ABC transporter C family member 3 1023 1275 - -
Vian6g00455 1286 CDD ABCC_MRP_domain2 1038 1258 - -
Vian6g00455 1286 SMART AAA_5 456 629 IPR003593 GO:0016887
Vian6g00455 1286 SMART AAA_5 1066 1251 IPR003593 GO:0016887
Vian6g00455 1286 Gene3D - 1023 1276 IPR027417 -
Vian6g00455 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1265 IPR027417 -
Vian6g00455 1286 SUPERFAMILY ABC transporter transmembrane region 740 1022 IPR036640 GO:0005524|GO:0016020
Vian6g00455 1286 Pfam ABC transporter 1058 1205 IPR003439 GO:0005524
Vian6g00455 1286 SUPERFAMILY ABC transporter transmembrane region 111 408 IPR036640 GO:0005524|GO:0016020
Vian6g00455 1286 FunFam ABC transporter C family member 5 704 1021 - -
Vian6g00455 1286 Gene3D - 411 670 IPR027417 -
Vian6g00455 1286 CDD ABC_6TM_ABCC_D2 740 1015 IPR044726 GO:0140359
Vian6g00455 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 651 IPR027417 -
Vian6g00455 1286 FunFam ABC transporter C family member 5 414 661 - -
Vian6g00455 1286 Pfam ABC transporter transmembrane region 114 382 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00455 1286 Pfam ABC transporter transmembrane region 742 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00455 1286 Pfam ABC transporter 447 581 IPR003439 GO:0005524
Vian6g00455 1286 Gene3D ABC transporter type 1, transmembrane domain 86 410 IPR036640 GO:0005524|GO:0016020
Vian6g00455 1286 Gene3D ABC transporter type 1, transmembrane domain 704 1021 IPR036640 GO:0005524|GO:0016020
Vian6g00455 1286 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 115 395 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian6g00455 1286 MobiDBLite consensus disorder prediction 1 26 - -
Vian6g00455 1286 ProSitePatterns ABC transporters family signature. 554 568 IPR017871 GO:0005524|GO:0016887
Vian6g00455 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1040 1274 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00455 Vian-Chr6 18970353 18975640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00455 429 675 Calmodulin-binding Proteins AT2G36910 29.630 3.53e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00455 - K05666 gmx:106794105 2195.62