Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00454 ATGAACACTGCTGATTGGGATCAAGAACTGAGAAAGTATCAAGATGTAATAGCTTCAGGTACCAAGAGTATGAAAATAAAGGCCATGATGATGCTGGCACGTTTTTCTAAGGATGCCCCTGAGTATGTTTTAGCTCGCACCATACCCATTCTCACTGAGATTCTTGGTCACAATGTTTCAAACGATTCTGGTCCTACACTTCAAGAGGCTGCTGCTTATTGCTTGAAGTGCATTGCTTGCAGGGGTGAGGGTGCGTTGGCCGTTGAAATTGGTGGACACGGTGCCCCTCATTCTTTGATGAGGTTGTTGCCTCACTCTGATGAAAGGATGCAGAAGGTTCTGATAAAGTGTTTGCTCGTTATTGTTTGTTTTTGTAATGCAACTAGGACAGTTGTTGCCACCAATGGTGGGGTGGAATTGATCTTTGGTTTGTTGAGTTCTTGCACCAATGATACTAAGAGGTATTTGTTGGAGATTTTGAGTGTGTTAGCATTGAGGAGGGATGTTAGGAAGGCTCTCACTAGACTAAGAGCTCTACATTATGTTGTGGAGGCTGCTAGTTTTGGGAGCATGGTGTCTAGGGAAAGGGCTTGTCAAGCAATTGGGTTGCTTGGAGTCACCAGACAGACTCGGCGTATGCTTGTTGAATTGGGAGCAATTCCAGTGCTTGTGTCCTTGTTTCGTGAAGGAGAACACTCCACAAAGCTTGTTGCTGGCAATTCTCTTGGTGTGATATCTGCTCATGTTGATTACATAAGGCCGGTTGCTCAAGCTGGGGCTATTCCCCTTTATGCTGAGCTTCTTGAAGGACCTGATCCCTCTGGGAAAGAGATAGCTGAGGATGTTTTTTGTATATTGGCTGTAGCTGAGGCTAATGCTGTTGAAATTGCTGGGCACTTGGTGAGGATTCTGAGAGAAGGTAATGATGAGGCGAAGGCTTCTGCGGCGGATGTGATGTGGGATCTGTCGGGTTACAAGCATTCAATGTCTGTAGTACGGGATTCAGGTGCGATTCCTCTTCTTGTTGAGCTTTTGGAGACTGGGAGTGAAGATGTGAAGGTGAATGTTTCTGGGGCATTTGCTCAACTGAGCTATGATGGAACTGATAGAATGTCACTTGCTGAAGCAGGGGCGATTCCAATTCTCATAGACTTGATGAATGATGTTGATGAGGTTGAGGAACTAAGGGATAATGCTACGGAGGCTCTTGTAAATTTTTATGAAGATCCATTGTATCATGATAGAGTGTCGGATGCAATTAATGTTTCTTCCTTCAGAAATATGCAGAATAGGTTAGTTCATATTCGGGCATCGAATGAGCACATGGCTAGATCCTTGAGAAGAATGAGTGTTGAGCAGCTCACATGGAACCCAGATCTTGTCTAA 1386 0.4459 MNTADWDQELRKYQDVIASGTKSMKIKAMMMLARFSKDAPEYVLARTIPILTEILGHNVSNDSGPTLQEAAAYCLKCIACRGEGALAVEIGGHGAPHSLMRLLPHSDERMQKVLIKCLLVIVCFCNATRTVVATNGGVELIFGLLSSCTNDTKRYLLEILSVLALRRDVRKALTRLRALHYVVEAASFGSMVSRERACQAIGLLGVTRQTRRMLVELGAIPVLVSLFREGEHSTKLVAGNSLGVISAHVDYIRPVAQAGAIPLYAELLEGPDPSGKEIAEDVFCILAVAEANAVEIAGHLVRILREGNDEAKASAADVMWDLSGYKHSMSVVRDSGAIPLLVELLETGSEDVKVNVSGAFAQLSYDGTDRMSLAEAGAIPILIDLMNDVDEVEELRDNATEALVNFYEDPLYHDRVSDAINVSSFRNMQNRLVHIRASNEHMARSLRRMSVEQLTWNPDLV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00454 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 336 378 IPR000225 GO:0005515
Vian6g00454 461 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 3 418 - -
Vian6g00454 461 SMART arm_5 325 365 IPR000225 GO:0005515
Vian6g00454 461 SMART arm_5 207 247 IPR000225 GO:0005515
Vian6g00454 461 SMART arm_5 366 408 IPR000225 GO:0005515
Vian6g00454 461 SMART arm_5 248 288 IPR000225 GO:0005515
Vian6g00454 461 SMART arm_5 35 80 IPR000225 GO:0005515
Vian6g00454 461 SMART arm_5 125 165 IPR000225 GO:0005515
Vian6g00454 461 Gene3D - 249 420 IPR011989 -
Vian6g00454 461 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 377 406 IPR000225 GO:0005515
Vian6g00454 461 Gene3D - 5 248 IPR011989 -
Vian6g00454 461 SUPERFAMILY ARM repeat 6 408 IPR016024 -
Vian6g00454 461 Coils Coil 382 402 - -
Vian6g00454 461 Pfam Armadillo/beta-catenin-like repeat 331 364 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00454 187 412 U-box Gene Family AT3G46510 26.496 3.09e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00454 - - gmx:100819735 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00454 6 18927722 18929107 Vian6g00454 6 18927722 18929107 ECH