Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00451 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCTTATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACTTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCATTGTCAAAGATAGAGTCAAATTCATATGTGCTAAGGCCACAGCATTCTCTTGAAATTGCTAGTGGCCCACCTGAGAATGATCCTTACGCGATTCTCGACCTTGATGACCTGTCGCATAAGATGAGAGAACTGGAAACTGCTATGCTAGGACCTAATGTGGATATGCTAGATATCTACGGCGCTCTAATGCCAGGAGAAGCTGATTCGATTTTGTTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCACGCAAGATGGTTTCCGTTTCTGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGATTCAGGAAGCACAATCTATAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACTTGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCATGCTCTTGCTCACCGTCCCGGAGGGCCACCAAAGATCAGAATATCAGGTGTCGATGACTCCTTTTCATCTTATGCCCGGGGAGGAGGACTTGATATTGTAGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAGCTTAAAGACCTTGAACTACGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATGTTGCACCATGTGCCTGATGCAAGTGTGAATGGCCACAATCATCGCGATAGGTTGTTGAGATTAGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTGGAGCAAGAATTTAACACCAACAACGCCCCATTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATTGATGCTGCTCGTCCAAGGGAGGACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTATCCTTTGAACTCCTTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGCCACTACACTCTAGAAGAGAAAGATGGAGCACTTTTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA 1641 0.4327 MQTSQNHKISYGSGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKIESNSYVLRPQHSLEIASGPPENDPYAILDLDDLSHKMRELETAMLGPNVDMLDIYGALMPGEADSILLEAEKWKKMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYLSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIMLHHVPDASVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGHYTLEEKDGALFLGWKNQVLIASCAWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00451 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 541 IPR005202 -
Vian6g00451 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
Vian6g00451 546 Pfam GRAS domain family 176 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00451 Vian-Chr6 18849637 18851277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00451 1 546 GRAS Transcription Factor Family AT1G50600 56.159 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian6g00451 GRAS 3.5e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00451 - - gmx:100785400 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00451 6 18849637 18851277 Vian7g01132 7 19531037 19532653 PCT