Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00448 ATGATGCCAAGTGTTAAGCCTGATGTATCGGAGAGAGACTCAGAGCCATTTGTTGAAATTGATCCAACAAGAAGATATGGCAGATACAATGAACTGCTGGGATGTGGTGCTGTGAAAAAGGTGTACAGGGCATTTGATCAGGAAGAGGGGATAGAGGTGGCATGGAACCAAGTGAAACTGAGGAACTTCAGTAATGATCCTGCAATGGTGGAAAGGCTTTACTCTGAGGTGAGATTGCTCAGAAGCTTGACCAACAAAAACATCATCTCCCTTTACAGCGTTTGGAGGGATGAGAAGCACAACACTTTGAACTTCATCACTGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGAAAGAAACACAGGCATGTGTCCATGAGAGCCTTGAAAAAGTGGTCCAAGCAGATTTTGGAAGGGTTGAATTACTTGCATGTTCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGCAATGTCTTTGTCAATGGGAACACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGGAAGAGCCACTCTGCACATTCAGTTCTAGGGACACCAGAATTCATGGCACCTGAGTTGTATGATGAAGACTACACTGAAATGGTTGACATATACTCATTTGGAATGTGTGTGTTAGAGATGGTAACACTAGAGATTCCTTACAGTGAATGTGACAATGTTGCTAAGATATACAAGAAGGTGTCATCAGGTGTGAGACCTCAAGCCCTGAGTAAGATCCAAGATCCTGAAGTGAAGGCCTTCATTGAGAGGTGTCTTGCTCAGCCAAGGGCTAGACCTTCTGCTGCAGAGTTGCTCAAGGACCCCTTCTTTGATTTGCTTGATTATGATGAAGATGTTGACTCTAATACTTCATGA 900 0.4456 MMPSVKPDVSERDSEPFVEIDPTRRYGRYNELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSNDPAMVERLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSVLGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQALSKIQDPEVKAFIERCLAQPRARPSAAELLKDPFFDLLDYDEDVDSNTS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00448 299 Gene3D Transferase(Phosphotransferase) domain 1 110 288 - -
Vian6g00448 299 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
Vian6g00448 299 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Vian6g00448 299 SUPERFAMILY Protein kinase-like (PK-like) 20 286 IPR011009 -
Vian6g00448 299 CDD STKc_WNK 25 285 - -
Vian6g00448 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00448 299 PIRSF TyrPK_CSF1-R 117 282 - -
Vian6g00448 299 PIRSF TyrPK_CSF1-R 25 130 - -
Vian6g00448 299 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Vian6g00448 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00448 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00448 Vian-Chr6 18766771 18768466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00448 1 286 MAP Kinase Kinase Kinase AT5G55560 81.034 0.0 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vian6g00448 Pkinase 1.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00448 K08867 - gmx:100818126 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00448 6 18766771 18768466 Vian6g00448 6 18766771 18768466 ECH
Vian6g00448 6 18766771 18768466 Vian7g01135 7 19569789 19571385 PCT