Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00442 ATGATGAGTGAGATAGAATCAGAGAGATACACCAGTCAGCGGTGGCGTCCTACCGAAAATCAGACCCAGATGATGACCAGAATCTACAACTTTGGGGTCACTCATCCAAGCCGAGCGCAAGTCGTCGAGATCACATCTCGACTAAGGACCTTCGGAGATGCCAGCGAATATAACGTGCACTGCTGGTTCAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAATTTTCACAACTGCCGCTATATATGTACGAATACGACTGGGTGATAATGAGGGCACCGAGGCTGCTGAATCTGTTTCCCGTTCCGATCATCATCGACGACGATAGGGACGAACGACAAATCCCGCCACCTATGCTCCTTGCATTCCGCACCAGAGCTCCCTCGACGGAGCTCTCCCTTAGACCACCACAACCAGCCCGAGAATTCTTCCATTTTTAG 465 0.5226 MMSEIESERYTSQRWRPTENQTQMMTRIYNFGVTHPSRAQVVEITSRLRTFGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYEYDWVIMRAPRLLNLFPVPIIIDDDRDERQIPPPMLLAFRTRAPSTELSLRPPQPAREFFHF 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00442 154 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Vian6g00442 154 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 76 IPR044559 GO:0003700
Vian6g00442 154 Pfam Homeodomain 12 72 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00442 Vian-Chr6 18585176 18585733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00442 1 76 Wox Gene Family AT5G59340 36.842 2.05e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian6g00442 Homeodomain 4.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00442 - K09593 vum:124821070 274.248