Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00440 ATGGCAGAACAATTGATGGGGGTTGGTGAATGTATTCTGAAATTAGTTTGGAAAGCTTTCCAAAGGCTGCAAAATCTCCCAGAAGGAGTTAAGGAGATTCAAGATGAACTTGGCATGTTGAAAAATTTCATGGAGGATAAAGAGGCTGATGGTGAAAATGATGCCACTGAGCGTAATAAAAAGATGCAACTGAGAAAAATAACCTTTCTCACGGAAGATGTGATTGACGAGTATTTGATACGTATTAGAGAAAAGCGACCTCAAGATGGTCGTGGATGGCCAGCGTTCCCCTCTAAGGCTGCTTACCACATCCAAACTCTGATCCCTCGATTTAAAATATCATATAAGATTGAGAGTATGTTATCAGTTGTTCGTAGGACAAACGAGCGTTGCACAAGAGATCGTCCAAAATCAACACAAAATGAAGCAAATAACACAATTTCATCACAACGTGAGGATCCTCTCATTAAAGATGATGAGATTGTTGGACTTGCTGAACCTACACAGATATTGGAAAATTTGTTAAGAAATGGACAAGAAGAACGCACTGTCCTTTTTGTTGAGGGTGCTCCAGGAGTTGGAAAAACCACTCTTGCCAGGCATGTTTTTGACAACGTCCATAACGACTTTAAGTGCCATGCATTGATCACAGTGTCTCAATCCTACGTTGTAGAAAAAGTGTTGAAGGATATGATATACATACTTTGCAAGGAACGCGGGGAAGATCCACCTAACAATCTACCTTCCCTTCTTCCTACGTTGAAAACAGAAGTCAGAAATTACTTGCGTGGGAAGAGGTATGTTCTCTTGTTTGATGACGTATGGGACGAAAACTTTTGGGTTGAAATTGAAAATGCTTTGATTGATGATAAAAATTCAAGTAGGATAATAATCACAACAAGGATAGAGAATGTTGCCAACTCTTGTAAGAATTCTACTTTTTTTGTTGAAGAATACAAGCTTGAAAACCCTTTAACTGAAGAAGAATCTTTGAGATTGCTTTATAAGAAGGCACGTTATAATTCTGATTATCCAGAAGAACTTAGAGATATAGCTCTTGAAATTGTTAGGACGTGTAGTGCTTTACCTCTAGCAATCGTGGTCGCTGGAGGACTCTTGTCAGAAAAAGGTGGAAGTGCACATGAGTGGCGACTGTTTAGTGAAGAATTGAAGAGGAATTCTGAGTTAAATATTGTGACAAAAATAATAGGTTTAAGTTATGATAATTTGCTGAGCCATCTCAGGTCATGTTTATTGTATTTCGGAATGTATCCAAAAGATTATGAAATTGAATCTGAGAGATTGGTTAGGCAATGGGTGGCTGAAGGATTTGTTACCCACGAAGAGGGAAAAACTTTAGAAGAAGTTGCACATAAATATTTACTAGAGTTGGTTCGTAGAAGTTTGGTGCAAGTGTTATCATTTTCCAAGAAAGAAAAAGTGAAAAAATGTCGTGTTAGTGACTCAATACACAATATGATCCGTACAAAGATGAAGGATACATGGTTTGGTGGCGGAGGGCATGATCAATCTGAGTCAAGTGAATTGGTTCGACGTCTGACAATTCAAGCCAACAATGATTTAAATAGACGTATTAAAAGATCACACATTCGGTCAATTATAAGCATTCCAGGAAAACAAGAAGAATCATGGTATTCCGATTTGGAAAGGAATATTCTTAAAGATGACATGCCATTGAAGGTACTTGATTTTGAGGGTTGTGGATTACCTTGTGTTCCTAAAATGTTGGGGAATTTAATCTACCTGAGGTATTTAAGCTTTAGGGGGACGCAGATAAAAGTTCTTCCAAAATCCATAGGCAAGCTCGTGAACTTGGAGACCTTGGATATACGACAAACGCAAGTGTGTAAGGTGCCGAAGGAGATCACAAAGCTTAGAAAGTTACTGCATCTTCTGACACCTGACTCTGCATTTTCTTCAATTGAATGGAAGGATATTGGAGGCATGACAAGGCTGCAAAAGATACCACAAGTGCGTATGGAGGGTGATGGAGTGGCCATTAAAGAGGTAGGGAAGTTAAAGCAGTTAAGGGTTCTGAGGGTGCTTTGTTTCGGCGCAGAGCACATTACTTCACTTTTCAACTCAATCAATGAGATGAAACACTTGCAAGCACTACGCATTGAAAAATCTGGTGATCGCATTGACTTGAACACTGAGACAATGTCTGGTGAGTGTAGACTTAGGAAGCTTTTCCTTGATATGAAGTTAGAAACGTTACCAAATTGGATTCCCCAACTCCGTCATCTTGAGAGATTGACCTTGCGCCACTCTGACTTAACCAATGATCCCTTGGAATCACTAAAAGATATGCCTAGTTTGTTGGTGCTCTCTTTATCCCACGCTTATGAAGGTCAAACTTTGCATTTTCAACCGGGAGGGTTCAAGACACTGAGAAAGCTAAACCTCGAACATCTTTGGAACTTGAATTCGATCCTTATTGAAGAGACAGCACTGCAGGCTCTGGAATATTTTGAGTTGACATGCCTCGATGATCTCAGAACTGTCCCCGATGGCATTCAACATCTGAGGAAACTTGTTCGTGTCTCTTATATGCCAACTCAATTTGTTGAGGAAATTATGGCTATATGTGATTCGCGCTTCTATAGTGCCCTCACGCTTCAGTCCAGCCCGCGTTTGAAGTCTGGTGACCTTCATTTTGAGCAACCTTGTCATATTTCATACCTTCGTCGCAAAGGCTTCTCTCGCACCAAAACACAGATGGAGAACTACACAAAAGTGGCAGAAACTTCAATGCCCTTTGCTCGTCGGTATTTGCCACCAAAACCTTTTGAAGCTTTGAAAATGATGAGAGATTTCTCAAAAGAAGTTGCAGAGATTACAGATGAACATGGAAGCTTGCTAGATTTCATCGATGATGCAGATAAAGTGGCTGATGCTGAAGAAGATGTCAAAAGGCGTGATAGAATGAAGGAAAGGTTGATGAGGCTGAGAGAAGCAGCTTTTCGCATGGAAGATGTGATTGATGAATATTGCATCCGTGTTAAAGAGAAACAACCTCAACATGGTCCTCGATGGGCGGCTTCACTCTCTAAGACTGTCCACAGCATCAAAACCTTCATCCTTCGACTTCAAATAGCATGTAAGATTCCGGATGAAAAATCAGTTGTTCGTGATGAAAAAGTTGGTTTTGAAAGGCAATATTTTTTAGAAAAAAAACTAAACAGTTCTAGAGAAAACAAAAATGTCACGTTTAATCAACTTCGAATGGATCCTCTCTTTATGAAGGAAGAGGAGGTTGTTGGACTTGCTGAACCTACAGAGAGATTGACAGATTGGTTAGCAATGGGACGAGAAGAACGCACTTGCCATGCATTGATCACAGTCTCTCAATCCTACACTGTAGAAGAATTGTTGAGGGATTTGGTACGCAAACTTTGCAAAGAGAGAAAGGAAGATCCACCTTGTAAAATTTCTACGATGGATAGAGGCTTCTTGATTGAAGAAGTCAGAGATCGCCTGCACAAGAAGAGGTATGTTGTCTTATTTGATGACGTATGGAATGAAAAGTTTTGGGATGACATTCAATCTGCTTTGATTGATGATAAAAACAAAAGTAGGATAATAATCACTACAAGGCTCGAGAAGGTTGCGGTCTTCTGTAAGAAATCTTCTTTTGTTAAAGTGCATAAGCTAGAAGAGCCATTAAAAGATGATTCTTTCAGATTGTTCTGTAGAAAGGCATTTAAGTATGGTTCTTCCGGAGGCTGCCCAGAAGAACTCAAAGACATATCTCTTGAAATTGTTAGGAAGTGTAAAGGTTTACCTCTGGCAATTGTGGCCATTGGTGGTGTCTTGTCCCAAAAAGATGACAGTGAAAAAGAATGGAGACTGTTTAGTCAAAATCTAAGTTCAGAGTTGAAGAGGAATCCTGATTTAAATATTATAACAAAAATTATAGGTTTAAGTTATGATAATTTGCCGAGCCATCTCAGATTATGTTTACTGTATTTCGGAATGTATCCAAAAGATTATGAAATTGAATCTGAGAGATTGGTTAGGCAATGGGTGGCTGAAGGATTTGTTACCCACGAAGAGGGAAAAACTTTAGAAGAAGTTGCACATGAATATTTACTAGGGTTGGTTCGTAGAAGTTTGGTGCAAGTGTCATCATTTTCCATGAAAGGAAAAGTGAAAAAATGTCGTGTTCATGACTTAATACACGATATGATCCGTACAAAAGTGAAGGATACATGTTTTGGAGAGTATATTGGCGGAGGGCATGATCAATCTGAGTCAAGTGAGTCGGTTCGACGTCTGACAATTCAAGCAAACAATGATTTAAATAGACGTATTAAAAGATCACACATTCGGTCAATTATAGTCATTCCAGGAAAAAAAGAAGAACTATTGTCTGTCCACTTGGTAAAGAAAATCCCTAAAGATTATATTCTATTGAAGGTACTTGATTTTGAAGATTGTGGATTACTTTGTGTTCCTAAAAAGTTGGGGAATTTAATCTACCTGAGGTATTTAAGCTTTAGGGGGACGCAGATAAAAGTTCTTCCAAAATCCATTGGTAAGCTCGTGAACTTGGAGACCTTGGATATACGACAAACGCAAGTGTGTAAGGTGCCGAAGGAGATCAAAAAGCTTAGAAAGTTACGGCATCTTCTGACACCTGACTCTGTATCTTCTTCAATTGAATGGAAGGATATTGGAGGCATGACAAGGCTGCAAAAGATACCACAAGTGCGTATGGAGGGTGATGGAGTGGCCATTAGAGAGGTAGGGAAGTTAAAGCAGTTAAGGGTTCTGAGGGTGCTTTGTTTCGGCGGAGAGCACATTACTTTACTTTTCTCCTCAATCAATGAGATGGAACACTTGCAAGCACTACGCATTGAAAAATCTGATGATCGCAACGTAGTTGACTTGACCACTACGTCAATCATATCTGAACTTAGGAAGCTTTTCCTTGATTTGAAGTTAGAAAAGTTGCCAAATTGGATTCCCCAACTCCTTCATCTTGAGAGATTGACCTTGCGCCACTCTGACTTGACCAATGATCCCTTGGAATCACTAAAAGATATGCCTAGTTTGTTGGTTCTCTCTTTATCCCACGCTTATGAAGGTAAAACTTTGCATTTTCAGCCTGGAGGGTTCAAGAAACTAAGAAAGCTAAATCTCGAACATCTTTGGAACTTGAATTCGATCCTTATGGATGAGACAGCTCTGCAGTCTTTGGAACATCTTAATTTGAAAGGCCTCGATGAACTCAGAACTGTCCCCGATGGCCTTCAACATCTGAAGAAACTTAAATTTCTTCTTGTCCTTTCTATGCCAACTCTATTTGTTAAGGAAATTGATCGCATTGATGTTTTTAAGTGTCATCAAGATGAACACTTTAAACGTGATCGAGATTTAGGAAGAAGTTTAGGCCTTCTGTTTGTAAATGTATACTGGTGTAAATTTAGTTACGAGGAAATTCTCATGAATCCAATTATTTCTGTCGCTTCTGTTATTGTTGCTGGATTGGCCGTAGGGCTTGCTTCTATTGGACCTGGGGTTGGTCAAGGCACTGCCGCAAGGCAAGCTGTAGAGGGGATTGCACAACAACCGGAGGCAGAGGGAAAAATACATGATACTTTATTACTTAGTCTAGCTTTTATGGAAGCTTTAACAATTTACGGGCTGGTTGTAGCATTAGCACTTTTATTTGCTAATCCTTTTGTTTAA 5715 0.3942 MAEQLMGVGECILKLVWKAFQRLQNLPEGVKEIQDELGMLKNFMEDKEADGENDATERNKKMQLRKITFLTEDVIDEYLIRIREKRPQDGRGWPAFPSKAAYHIQTLIPRFKISYKIESMLSVVRRTNERCTRDRPKSTQNEANNTISSQREDPLIKDDEIVGLAEPTQILENLLRNGQEERTVLFVEGAPGVGKTTLARHVFDNVHNDFKCHALITVSQSYVVEKVLKDMIYILCKERGEDPPNNLPSLLPTLKTEVRNYLRGKRYVLLFDDVWDENFWVEIENALIDDKNSSRIIITTRIENVANSCKNSTFFVEEYKLENPLTEEESLRLLYKKARYNSDYPEELRDIALEIVRTCSALPLAIVVAGGLLSEKGGSAHEWRLFSEELKRNSELNIVTKIIGLSYDNLLSHLRSCLLYFGMYPKDYEIESERLVRQWVAEGFVTHEEGKTLEEVAHKYLLELVRRSLVQVLSFSKKEKVKKCRVSDSIHNMIRTKMKDTWFGGGGHDQSESSELVRRLTIQANNDLNRRIKRSHIRSIISIPGKQEESWYSDLERNILKDDMPLKVLDFEGCGLPCVPKMLGNLIYLRYLSFRGTQIKVLPKSIGKLVNLETLDIRQTQVCKVPKEITKLRKLLHLLTPDSAFSSIEWKDIGGMTRLQKIPQVRMEGDGVAIKEVGKLKQLRVLRVLCFGAEHITSLFNSINEMKHLQALRIEKSGDRIDLNTETMSGECRLRKLFLDMKLETLPNWIPQLRHLERLTLRHSDLTNDPLESLKDMPSLLVLSLSHAYEGQTLHFQPGGFKTLRKLNLEHLWNLNSILIEETALQALEYFELTCLDDLRTVPDGIQHLRKLVRVSYMPTQFVEEIMAICDSRFYSALTLQSSPRLKSGDLHFEQPCHISYLRRKGFSRTKTQMENYTKVAETSMPFARRYLPPKPFEALKMMRDFSKEVAEITDEHGSLLDFIDDADKVADAEEDVKRRDRMKERLMRLREAAFRMEDVIDEYCIRVKEKQPQHGPRWAASLSKTVHSIKTFILRLQIACKIPDEKSVVRDEKVGFERQYFLEKKLNSSRENKNVTFNQLRMDPLFMKEEEVVGLAEPTERLTDWLAMGREERTCHALITVSQSYTVEELLRDLVRKLCKERKEDPPCKISTMDRGFLIEEVRDRLHKKRYVVLFDDVWNEKFWDDIQSALIDDKNKSRIIITTRLEKVAVFCKKSSFVKVHKLEEPLKDDSFRLFCRKAFKYGSSGGCPEELKDISLEIVRKCKGLPLAIVAIGGVLSQKDDSEKEWRLFSQNLSSELKRNPDLNIITKIIGLSYDNLPSHLRLCLLYFGMYPKDYEIESERLVRQWVAEGFVTHEEGKTLEEVAHEYLLGLVRRSLVQVSSFSMKGKVKKCRVHDLIHDMIRTKVKDTCFGEYIGGGHDQSESSESVRRLTIQANNDLNRRIKRSHIRSIIVIPGKKEELLSVHLVKKIPKDYILLKVLDFEDCGLLCVPKKLGNLIYLRYLSFRGTQIKVLPKSIGKLVNLETLDIRQTQVCKVPKEIKKLRKLRHLLTPDSVSSSIEWKDIGGMTRLQKIPQVRMEGDGVAIREVGKLKQLRVLRVLCFGGEHITLLFSSINEMEHLQALRIEKSDDRNVVDLTTTSIISELRKLFLDLKLEKLPNWIPQLLHLERLTLRHSDLTNDPLESLKDMPSLLVLSLSHAYEGKTLHFQPGGFKKLRKLNLEHLWNLNSILMDETALQSLEHLNLKGLDELRTVPDGLQHLKKLKFLLVLSMPTLFVKEIDRIDVFKCHQDEHFKRDRDLGRSLGLLFVNVYWCKFSYEEILMNPIISVASVIVAGLAVGLASIGPGVGQGTAARQAVEGIAQQPEAEGKIHDTLLLSLAFMEALTIYGLVVALALLFANPFV 1904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00440 1904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 421 IPR027417 -
Vian6g00440 1904 Gene3D - 1108 1222 IPR027417 -
Vian6g00440 1904 CDD ATP-synt_Fo_c_ATPH 1827 1901 - -
Vian6g00440 1904 SUPERFAMILY F1F0 ATP synthase subunit C 1828 1902 IPR035921 -
Vian6g00440 1904 Gene3D Ribonuclease Inhibitor 508 668 IPR032675 -
Vian6g00440 1904 Gene3D Ribonuclease Inhibitor 1422 1581 IPR032675 -
Vian6g00440 1904 Gene3D - 1317 1408 IPR036388 -
Vian6g00440 1904 Gene3D - 407 498 IPR036388 -
Vian6g00440 1904 SUPERFAMILY L domain-like 557 900 - -
Vian6g00440 1904 FunFam Probable disease resistance protein At1g63360 407 496 - -
Vian6g00440 1904 Pfam Rx N-terminal domain 13 86 IPR041118 -
Vian6g00440 1904 Pfam Rx N-terminal domain 941 1016 IPR041118 -
Vian6g00440 1904 Gene3D - 936 1040 - -
Vian6g00440 1904 Gene3D - 8 114 - -
Vian6g00440 1904 PRINTS ATP synthase C subunit signature 1856 1871 IPR000454 GO:0015078|GO:0015986|GO:0045263
Vian6g00440 1904 PRINTS ATP synthase C subunit signature 1873 1898 IPR000454 GO:0015078|GO:0015986|GO:0045263
Vian6g00440 1904 PRINTS ATP synthase C subunit signature 1835 1854 IPR000454 GO:0015078|GO:0015986|GO:0045263
Vian6g00440 1904 Gene3D - 150 317 IPR027417 -
Vian6g00440 1904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1078 1331 IPR027417 -
Vian6g00440 1904 Pfam ATP synthase subunit C 1834 1896 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vian6g00440 1904 SUPERFAMILY L domain-like 1395 1777 - -
Vian6g00440 1904 MobiDBLite consensus disorder prediction 128 152 - -
Vian6g00440 1904 Hamap ATP synthase subunit c [atpH]. 1833 1898 IPR000454 GO:0015078|GO:0015986|GO:0045263
Vian6g00440 1904 NCBIfam ATP synthase F0 subunit C 1843 1900 IPR005953 GO:0015078|GO:0015986|GO:0045263
Vian6g00440 1904 PANTHER DISEASE RESISTANCE PROTEIN RP 63 825 IPR044974 GO:0006952
Vian6g00440 1904 Gene3D F1F0 ATP synthase subunit C 1824 1901 IPR038662 -
Vian6g00440 1904 FunFam Probable disease resistance protein At1g63360 1317 1406 - -
Vian6g00440 1904 FunFam ATP synthase subunit c, chloroplastic 1824 1901 - -
Vian6g00440 1904 Gene3D Ribonuclease Inhibitor 672 866 IPR032675 -
Vian6g00440 1904 Gene3D Ribonuclease Inhibitor 1587 1775 IPR032675 -
Vian6g00440 1904 Gene3D - 1229 1316 IPR042197 -
Vian6g00440 1904 Gene3D - 324 406 IPR042197 -
Vian6g00440 1904 Pfam NB-ARC domain 1117 1319 IPR002182 GO:0043531
Vian6g00440 1904 Pfam NB-ARC domain 169 409 IPR002182 GO:0043531
Vian6g00440 1904 Coils Coil 973 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00440 Vian-Chr6 18522049 18550725 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00440 189 370 WRKY Transcription Factor Family AT5G45050 26.923 1.01e-07 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00440 K13457 - tpra:123915389 1091.26