Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00438 ATGGCAGAATTTGGATTGTCTATTGCGATTAATAATTTGATTTCAAAATGTTTCAAAGCTTTAAAGATGCTGATAGATCTCCCACAAGAAGTTGCAGAAGTTAGAGATGAACTAGAAAGCTTTCAATATTTCATCCATGAAGAAGACAAAGTGGCTGAAGCTGAAGAAGATAAAGTGGCAGAAGCTGAAGAAGATAACAAAAGGAGTCATGGAATAAGAAAAAGATTGATGAAGCTGAGAAAAGCAGCTTATCGCATGGAAGATGTAATCGATGACTATGAGATATTTAAGGAAAATCAACCTGAAGAAGATCCTCGGTGTGCAGCTTTACTCCGTGAGACTGTTAAAATCATCAAAACTCAAATCCTTCTCATTCCAATAGTGTTTCGGATTCAGGATGTTAAGAAACTTATTCGTGAGGAAAGAGATGGCTTCGAAAAAAGTTTTCCTAGAGGATCAACATCAGACGGTTCAAGAGGAAATGAAAATTCCACATGGCTTAAACTTCGAATGGATCCTTTCTTTATGAAGGAAGACGAGGTTGTTGGCTTTGAAGAACCTATACAAAGATTGACAAAGTGGTTGACAGAGGGAGGAAAGGAACGCACTGTCATCTCTATTGTAGGAATGGCAGGATTGGGAAAAACCACTCTTTCTAAGCAAGTTTTTGACAGGGTCAAAGACTTTGACTGCCATGCGTTGATCACAGTGTCTCGATCCTACACTGTTGAACGGCTGCTGAGGGATTTGATGAAGGAGCTTTGCAACGACAGAGCGGAGAAACCTCCTCCGGATCTTGCAACTATGAATCGAATGTCGTTGATAAAAGAAGTCATAAACCGCTTAAGGAATAAGAGGTATGTTGTCTTGTTTGATGACGTATGGAAAGAAAAATTTTGGGATGACATTGAATCTGCTTTAATTGATGATAAAAATAAAAGTAGAATATTAATCACTACCCGTGATGAGAAGGTTGTGGAGTTCTGTAAGAAAGCTTTATCTTTTAAGGTGCATAAGTTACAACCTTTAAGTGATGCAAAATCATTGGAGTTGTTATTTAAGAAGGCGTTTGGGTATGGTTTTGATGAACGTAGTCCAAAAGATTATGAAAAAGTAGGTCTGGATATTGTTAGGAAGTGCGGATATTTACCTCTAGCAATTGTAGCTATTGGTAGTCTTTTGTATAGAAAATATGAAACTCCTCCTGAATGGGTCCTGTTTTAA 1224 0.3766 MAEFGLSIAINNLISKCFKALKMLIDLPQEVAEVRDELESFQYFIHEEDKVAEAEEDKVAEAEEDNKRSHGIRKRLMKLRKAAYRMEDVIDDYEIFKENQPEEDPRCAALLRETVKIIKTQILLIPIVFRIQDVKKLIREERDGFEKSFPRGSTSDGSRGNENSTWLKLRMDPFFMKEDEVVGFEEPIQRLTKWLTEGGKERTVISIVGMAGLGKTTLSKQVFDRVKDFDCHALITVSRSYTVERLLRDLMKELCNDRAEKPPPDLATMNRMSLIKEVINRLRNKRYVVLFDDVWKEKFWDDIESALIDDKNKSRILITTRDEKVVEFCKKALSFKVHKLQPLSDAKSLELLFKKAFGYGFDERSPKDYEKVGLDIVRKCGYLPLAIVAIGSLLYRKYETPPEWVLF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00438 407 PANTHER DISEASE RESISTANCE PROTEIN RP 33 404 IPR044974 GO:0006952
Vian6g00438 407 Coils Coil 45 65 - -
Vian6g00438 407 Pfam NB-ARC domain 185 404 IPR002182 GO:0043531
Vian6g00438 407 Gene3D - 172 335 IPR027417 -
Vian6g00438 407 PRINTS Disease resistance protein signature 204 219 - -
Vian6g00438 407 PRINTS Disease resistance protein signature 281 295 - -
Vian6g00438 407 PRINTS Disease resistance protein signature 380 394 - -
Vian6g00438 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 405 IPR027417 -
Vian6g00438 407 Gene3D - 342 406 IPR042197 -
Vian6g00438 407 Gene3D - 6 123 - -
Vian6g00438 407 FunFam Probable disease resistance protein At1g61300 168 332 - -
Vian6g00438 407 Pfam Rx N-terminal domain 6 101 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00438 Vian-Chr6 18367012 18368235 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00438 180 403 WRKY Transcription Factor Family AT5G45050 26.106 2.65e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00438 K13457 - var:108341366 689.108