Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00424 ATGGCATCTTCAGATGACGAGGGAGAGTCTCAGCCACTATCTGTGTCAAATTACTATTTTGAAGATTACAAAGATGTGCCGGTGTGTTTTTCCGTGTTACCAATTGTGTGGAGTGAGTCAGAGAGTCCAGTTAGCAAGAAAGTACAGGTGTTTTTGCGTGGTTTTTCAGATAATGGGCTGCAGAAGATTTTCATGCAAGTTGTTGCGTGGAGGTTTGATCTTTCCTATGTGAGGCCTGAGATATCGGTCTTGTCAAAGGATGGGAGATGGATTAAACTCGAGAAGCCTAGGAAAAGCTACGAGGAAACAATAAGATCTATTTTGATCACCATTCACTTCATGGGTTATGTGAAGAGGAATCCTGACTCATCTGCCAAGTCTGCGTGGGATAGCTTGAGTAAGAATAAGGAGTTTAGATCTTATGAAGTTATGCCTTCGCAAAATGATATATTAAATCATATGACTTTAATGGGTGAAGCTGCCAAAAGAGATGCTGGCTTAGCAAAGTCCAAGCTTTTCCTCATGATTCGGGAAGATAAACATAAGCTGAAGATTAAGAAACTTTCTGATGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAATTGATGATACTGACAATGATTTGATTGATGAAATTGATGATGATTCAGATGGGGAGGATGGGTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGCGAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGATGGTGAAGAATCTGCTTGTGCCTCTCTTGGTTTTAGCCAGAAGCAAGTTGATGATATCCAGAACTTCTACTGTAAGAATTGTGAATATAATCAACATCAGTGCTTTGCATGTGGTACTCTAGGCTGCTCTGATAAATTTTCTGGTGCTGAGGTCTTCAAATGTGCGTCTGCAACCTGTGGTTTCTTTTATCATCCACAATGTGTTGCAAAGTTACTTCACCGGGTAGTTGAGGAGGCTCCAGATCCGAAGGAACTTGAGAGAAATATTGCTGAAGGAGGAGCTTTTACTTGTCCTACTCATTACTGTTGTGTCTGTAAAGGAATGGAAGACAAAAATGAACATGATTTTCACTTTGCTGTTTGTAGGCGTTGCCCCAAGTCCTACCATCGCAAATGCTTGCCAAGGAAGATTGCATTTGATGACATAGAGGATGAAGATATTGTAACAAGGGCTTGGGAAGACCTTCTACCCAACAATCGCATTCTTATATATTGTTTAAAACATGAGATTGATGATGAATTTGGGACTCCTCTAAGGGATCATATAAAGTTTCCCAATGTAAAAGCTTCTGTTCGAGAAGTTAATGATGAGGACAATGAAAAGCCTGCAAACAAAGAGAGGGTTATATTGGACAAGAACAGCATTGTCTCTGAAAATTTAATTGGCAAAAAGGCTGCTTTGAAATTTTCTAATAAACTGTCTGGTAAAATGTCTTCAGGAAAAGTGGTTGACAAGAAGTCTGAAAAGATTTCTGGATCAAATATTTCAAGGAAGAAAACAAATGAGCCATCAAGAAGGGGTTTGAATGAATGTAAGAGGCCATTAGTCCCAAAGGAAACCAGAAAGTCTGAGGGTGCAGAAAATAAGTCCTCATTGGGTGCAAAATTATTTGCCTTTTGGCAAAATGGTTCTGAGCAAATTAATTCTGGTAATAAGGTTAATAATGTAGCTAATAATTCCCGGCATGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTACCCTCATTAGATGAAGATGCAGAGAGGAGATTGGTGGCTATGTTTAAAGAAGCTACTTCATCAGTTACTTTGGAGGATGTTGTAAAAGAGCACAATTTTGTTAGTACTCATACCCACTCATTGAAAAATGTTGTGGAGAAAACCATTACGTTGGGGAAATTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAGGATGCTAGAGGGTGGGCACAATGTTCGGGATGCTGCAGCTGTTTGTGGTCCTGATGTTCTTAACCAAATATTTAAGTGGAAGGATAAGCTGAAAGTATATCTTGCACCTGTTCTATATGGTAATCGGTACACATCGTTTGGCCGCCATTTTACACAAGTTGAAAAGCTGGAAGGGATTGTTGATAAACTGCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGACTTCAGCATTCTTATGAAGAAAAAGCTTGAAGAGACTGGAAAGAGATGCTCATACAAAAACTTTGATCTACTTCCAACGAAGAATGATTTTAATTTTGAGATGCGAGATTGGATGACTGTACAAACAAAGGAGTTGCCTACAGGGTCAAAGTTGATCATGGGCTTAAATCCCCCCTTTGGACTAAAGGCAGCATTGGCTAACAAGTTTATAGACAAAGCTCTTGAGTTCAGACCGAAGCTCATGGTTCTCATCGTACCATCAGAGACACAGAGGCTAGATGAGAAACGGCGTCCGTATGATCTTGTCTGGGAGGATGAGAGGTTTCTATCGGGCAAGTCATTTTATCTACCTGGATCAGTTGATGCTAATGACAGGCAAATAGAGCAGTGGAATGTAAAGCCACCCCCACTGTACCTTTGGAGTCGTCCTGATTGGACTAGCAAGCACAAGGCCATAGCTCGGGAGCATGATCACCTGATCAGCCAGCGTGAGGTGTCACCTTCCAGTCATACTAAGGAGGATAATTCCGATGTCAATATCAAGCAAGGTGATGACATCTTGAATTCAATTGATGCACCTATCAATGAAGGTCAGGTGAGATACTCACCACATGGAAGTGTTGATCGAGGGAGTCAAGAGAGACAGGAATATAGGGTGAGCGATCCTGAGAATACCTCATGGAAGAGGAAACGACGTGAGGAAAATGATGAAAGAGGACTAGGTGTGACCTCACCAGTCAATCCAATTGATATGAGATCCTCAATTGAACGTTTGCAGCCTAAACATGACATGCCACCTCCAGATTTTGAGGTTGTTGATAAAGGTTATAGGAATTTGGAGCCTACCTCTTCCTCACATACAGGGGGGATTAGGGGATCCTATAGCGGGACCGACTATTGGCCAAGTGTTTCCAATCCCCTTTATGATTCTGGGGTTACAGGCGTAGATGGACGCCATGGCAGCCTTATGAGAGACACCGGATATAGACCCTATGTCAGGGAGGATGAGAGCAACCTTAGGGAACTAGGGACAAGGCAACATATTCGCCAATACGGGCTTCAGAATCCTAATAATGTGACTGGTAATTATCTATCATCTGTTCACGATCCTGCTTATAGACATGAGGGATTAAGTTATCCAGCCCATGGCTCATCATATGAGTCTCCTTATGCCATGAATGCACCAGCCATGCAGCGATATGCACCTCGTCTGGACGAATTAAACCACGTAAGGATGGATCCTCTGGGGTCTGAGCCTCCTCCTATAGTTGGACGTAGTGTGCCCCAACCTGGATATGAGAATTGGATGCCAGGTTTTGCAGGCAGTTCTCACCATCTCAATTCACGCCAGAATTCAGCAGACCGGTTCAACCAATAG 3585 0.4201 MASSDDEGESQPLSVSNYYFEDYKDVPVCFSVLPIVWSESESPVSKKVQVFLRGFSDNGLQKIFMQVVAWRFDLSYVRPEISVLSKDGRWIKLEKPRKSYEETIRSILITIHFMGYVKRNPDSSAKSAWDSLSKNKEFRSYEVMPSQNDILNHMTLMGEAAKRDAGLAKSKLFLMIREDKHKLKIKKLSDEEVKDLARPGFIIDDTDNDLIDEIDDDSDGEDGLFDSVCAICDNGGELLCCDGKCMRSFHANEEDGEESACASLGFSQKQVDDIQNFYCKNCEYNQHQCFACGTLGCSDKFSGAEVFKCASATCGFFYHPQCVAKLLHRVVEEAPDPKELERNIAEGGAFTCPTHYCCVCKGMEDKNEHDFHFAVCRRCPKSYHRKCLPRKIAFDDIEDEDIVTRAWEDLLPNNRILIYCLKHEIDDEFGTPLRDHIKFPNVKASVREVNDEDNEKPANKERVILDKNSIVSENLIGKKAALKFSNKLSGKMSSGKVVDKKSEKISGSNISRKKTNEPSRRGLNECKRPLVPKETRKSEGAENKSSLGAKLFAFWQNGSEQINSGNKVNNVANNSRHVKPTKKLSSALPSLDEDAERRLVAMFKEATSSVTLEDVVKEHNFVSTHTHSLKNVVEKTITLGKLEGSVEAVRTALRMLEGGHNVRDAAAVCGPDVLNQIFKWKDKLKVYLAPVLYGNRYTSFGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQTKELPTGSKLIMGLNPPFGLKAALANKFIDKALEFRPKLMVLIVPSETQRLDEKRRPYDLVWEDERFLSGKSFYLPGSVDANDRQIEQWNVKPPPLYLWSRPDWTSKHKAIAREHDHLISQREVSPSSHTKEDNSDVNIKQGDDILNSIDAPINEGQVRYSPHGSVDRGSQERQEYRVSDPENTSWKRKRREENDERGLGVTSPVNPIDMRSSIERLQPKHDMPPPDFEVVDKGYRNLEPTSSSHTGGIRGSYSGTDYWPSVSNPLYDSGVTGVDGRHGSLMRDTGYRPYVREDESNLRELGTRQHIRQYGLQNPNNVTGNYLSSVHDPAYRHEGLSYPAHGSSYESPYAMNAPAMQRYAPRLDELNHVRMDPLGSEPPPIVGRSVPQPGYENWMPGFAGSSHHLNSRQNSADRFNQ 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00424 1194 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 910 - -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 895 984 - -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 943 975 - -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 1177 1194 - -
Vian6g00424 1194 CDD PHD2_NSD 288 355 - -
Vian6g00424 1194 SMART PHD_3 228 283 IPR001965 -
Vian6g00424 1194 SMART PHD_3 288 356 IPR001965 -
Vian6g00424 1194 SMART PHD_3 357 424 IPR001965 -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 1150 1194 - -
Vian6g00424 1194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 285 IPR013083 -
Vian6g00424 1194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 405 IPR013083 -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 494 543 - -
Vian6g00424 1194 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 133 IPR022702 -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 491 543 - -
Vian6g00424 1194 MobiDBLite consensus disorder prediction 895 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00424 Vian-Chr6 18064908 18086295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00424 226 329 PHD Transcription Factor Family AT3G14980 32.692 1.69e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00424 - - gmx:100803073 1892.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00424 6 18064908 18086295 Vian7g01149 7 19770462 19792281 PCT