Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00405 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACAAACCCTGAGCTTCTCGCGGTTCATGAGGAGCTTGTCCAGGCAATTAAGGACGCAGAAGAAGGACTTTTTCACCTAAAACGTGCACGATTGTTACAGGAAGCGGATGCAATTCTGCATAACACTAATATTTTTGCTGAAGAGGAGAAAGTGGAACTCCTTGATCCCAGAGATGTTGAACCAGAACCTTTGGAGGGAAAAAGTCATTCTGTTGGATCTAAATGTAGATTCCGTCACATAGATGGGCGCTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTCCTTACACCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCCGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGGAATCCCTTGTCGGATCAAGCATATGGGCAGTCTCAACTGCAAATTCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGACGAAAAGGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGTAGTACTGTGAAACTTGGTGCAGAACAAATTACACTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCATACAGCAATCTGAGTCCAGTGACTATGAGGAGGATGATGAATCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGAGTTCAAACTGAAACTGCAACATTTGCCACTTGGGAAAACCACACCAGAGGCATAGCGTCCAAAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGACCCCATACCAGTGAAGATGCTACCACCAAAGCAATCCTTGGATCATGCTCTTGAGTCTCATAGAAGGGAAGAGAATGAAGACAAGGAATTGAAGAAGAAACGGAGCCGAGGTGGCAAGAGAAAACGTGAGAAGAAATTTGCACAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCAACATCAGATGTCTTTGCATTGATAAACAATCAGCTGGCAATGCACAATGAGGCTTTCGGTGGTGGATCAACGAAGAAGCAGCAAAGTAAAGGTTCCGGGGAAGGTAGAAAGGTAGATAGACGAGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAAGGTTGAAAAGCTCGAGCAAATTGTGAATGTCAATAAGAAAGAGAAGGCTGTGTATGAGGCTGCTATGAGAAAACTAAATGAAACCCGCAAAGCCTTGGCTGATGCCGAAGCAGTTCACGCCTCTGCCTCAAATGCTGTTGTTAGCAAAGAAAAAGAGAAAAGATGGCTCAAGTTTTAG 1491 0.448 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNPELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAILHNTNIFAEEEKVELLDPRDVEPEPLEGKSHSVGSKCRFRHIDGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGVDVHLSALKKFVPTIWKESLVGSSIWAVSTANSGTWREAELESWDEKAGVGQVVFRDDGSTVKLGAEQITLSEHAEVSDSESDSSIQQSESSDYEEDDESQGLGFLESTNLQRGVQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKMLPPKQSLDHALESHRREENEDKELKKKRSRGGKRKREKKFAQANRAAKEEEESTSDVFALINNQLAMHNEAFGGGSTKKQQSKGSGEGRKVDRRALVAYEEEVKDLKMKVEKLEQIVNVNKKEKAVYEAAMRKLNETRKALADAEAVHASASNAVVSKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00405 496 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Vian6g00405 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Vian6g00405 496 Coils Coil 425 452 - -
Vian6g00405 496 Coils Coil 362 382 - -
Vian6g00405 496 Pfam G-patch domain 295 336 IPR000467 GO:0003676
Vian6g00405 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Vian6g00405 496 Coils Coil 336 356 - -
Vian6g00405 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Vian6g00405 496 Gene3D - 106 178 - -
Vian6g00405 496 MobiDBLite consensus disorder prediction 239 267 - -
Vian6g00405 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Vian6g00405 496 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Vian6g00405 496 MobiDBLite consensus disorder prediction 399 419 - -
Vian6g00405 496 Coils Coil 456 476 - -
Vian6g00405 496 SMART G-patch_5 293 339 IPR000467 GO:0003676
Vian6g00405 496 MobiDBLite consensus disorder prediction 339 383 - -
Vian6g00405 496 MobiDBLite consensus disorder prediction 339 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00405 Vian-Chr6 17391463 17397553 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vian6g00405 G-patch 2.4e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00405 - - gmx:100796284 796.193