Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00404 ATGGGTGGTGATGACGCCGGGAAATCCGGTTCAAGGCCGGTTTTTTTCAAAGAACAGAAATTCCGCGGCGTCCGGAAGAGACCGTGGGGCCGGTTCGCCGCCGAAATCAGAGACCCTTTGAAGAAAGCGAGGGTTTGGCTCGGAACCTTTGACTCCGCCGAGGATGCGGCGCGTGCGTACGACGCGGCGGCGAGAACCCTCCGGGGACCCAAGGCGAAGACCAACTTTCCACTCCCTCCGCCGTTATATCATCCCGATCCGTTCACTGACAACCGGTATTTCGCAGGACCAGGCGAGCCCTTTCACGATCACCGGCAGCCCACCTCCAGCGGCATGAGCAGTACCGTCGAGTCATTCAGCGGCCCACGCGCCGCCGCCACAACGGCGAACCCGGTGGCAGTCGCCCGCAGATACCCGCGAACGCCGCCGGTAGTTCCCGAGGACTGCCGCAGCGACTGTGACTCTTCGTCCTCCGTTGTGGAAGACGGCGACGGTGACAACGCTGCGTCGTCGTTTCGACGAGAACCGTTGCCGTTTGATCTCAACGTTTTACCGTTGGAGGATTCCGACGTGGCAAACGGTGGCGTGGATAATGATATGTTCTGCACCGTTCTTTGTCTCTGA 624 0.6058 MGGDDAGKSGSRPVFFKEQKFRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLPPPLYHPDPFTDNRYFAGPGEPFHDHRQPTSSGMSSTVESFSGPRAAATTANPVAVARRYPRTPPVVPEDCRSDCDSSSSVVEDGDGDNAASSFRREPLPFDLNVLPLEDSDVANGGVDNDMFCTVLCL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00404 207 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Vian6g00404 207 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Vian6g00404 207 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Vian6g00404 207 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Vian6g00404 207 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Vian6g00404 207 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Vian6g00404 207 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
Vian6g00404 207 MobiDBLite consensus disorder prediction 104 173 - -
Vian6g00404 207 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Vian6g00404 207 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Vian6g00404 207 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 20 182 - -
Vian6g00404 207 MobiDBLite consensus disorder prediction 106 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00404 Vian-Chr6 17352498 17353121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00404 17 207 AP2-EREBP Transcription Factor Family AT1G50640 59.420 1.89e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian6g00404 AP2 3.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00404 K09286 - gmx:100782025 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian6g00404 6 17352498 17353121 Vian6g00404 6 17352498 17353121 ECH
Vian6g00404 6 17352498 17353121 Vian7g01172 7 20041177 20041833 PCT