Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00385 ATGTTTGGAATCCCCTCTATAGGCAGAGACCGCGCTAATCTCACCCTGCCCAACCAATCCGGACCCAAACCTGAATCTCCGCCGCACGAGACCGCCTGCTCGGGTCACCGGAGGAGTAATTCCGCGGACACCTCTTCCTCCTTGCTGCTCGAAGGCATTGAGGCCAAGAAGGCCTTGTCCCCCGATAAGCTCGTCGAACTCTGGACCGTTGATCCCAAACGTGCCAAGAGGATTCTCGCTAACCGTCAATTCGCAGCGCGCTCCAAAGAGAGGAAAGCTTGTTATGTGTCAGAGCTTGAAAGGAAATTTCAATCCCTTCAAAGAGAGACCGCTTCTTCCACTGTGAATGCAGGTTTGGTTTATGGGTGGTGTCGTACTGGTAACATATCCAAGGCTGAAGAGGTGTTTAATGAGAAGGCTAGGAGGACTGAGAAGGTTGGGAGGACTGAGAAGGTATTGCAGCTTTACAATCAGATGAAGAGGCTAGGTTGTCTTGCAGATACCATTAGCTACAATTTCATCATTGAGAGTCATTGCAGGGATGAGAATCTTGATGAGGCTGTGAAGAATCTCAATTTGATGGTGAAGAAAGGGGTTGCTCCTAATGCGTCCACTTTCAATTGTGTTTTTGGATGCATAGCTAAGTTGCATGATGTGAATGGTGCGCACTGGATGTATGCTAGAATGAAGGAGCTGAAGTGCCAGCCCAATACGTCGATGTTTTGTGAAATGAAGCACTGGAACAATGCTTACAAGTTAATGAAGGAAATGGTTGAAGAAAAATGCCTAAGACCCAATCTATTAGTTTATGAAACGGTTATGGAGCTGCTCAGAAATGCTGATTGA 846 0.4716 MFGIPSIGRDRANLTLPNQSGPKPESPPHETACSGHRRSNSADTSSSLLLEGIEAKKALSPDKLVELWTVDPKRAKRILANRQFAARSKERKACYVSELERKFQSLQRETASSTVNAGLVYGWCRTGNISKAEEVFNEKARRTEKVGRTEKVLQLYNQMKRLGCLADTISYNFIIESHCRDENLDEAVKNLNLMVKKGVAPNASTFNCVFGCIAKLHDVNGAHWMYARMKELKCQPNTSMFCEMKHWNNAYKLMKEMVEEKCLRPNLLVYETVMELLRNAD 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00385 281 Pfam PPR repeat family 167 212 IPR002885 -
Vian6g00385 281 Gene3D Tetratricopeptide repeat domain 122 281 IPR011990 GO:0005515
Vian6g00385 281 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Vian6g00385 281 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 25 113 - -
Vian6g00385 281 SUPERFAMILY Leucine zipper domain 73 112 IPR046347 GO:0003700|GO:0006355
Vian6g00385 281 CDD bZIP_plant_RF2 74 112 IPR044759 GO:0003700|GO:0006355
Vian6g00385 281 Gene3D - 72 115 - -
Vian6g00385 281 MobiDBLite consensus disorder prediction 1 45 - -
Vian6g00385 281 Pfam PPR repeat 145 164 IPR002885 -
Vian6g00385 281 Pfam PPR repeat 119 138 IPR002885 -
Vian6g00385 281 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Vian6g00385 281 NCBIfam pentatricopeptide repeat 145 167 IPR002885 -
Vian6g00385 281 NCBIfam pentatricopeptide repeat 205 238 IPR002885 -
Vian6g00385 281 NCBIfam pentatricopeptide repeat 169 203 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00385 Vian-Chr6 16722422 16723661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00385 36 173 bZIP Transcription Factor Family AT2G40620 47.222 4.03e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00385 - - gmx:100800850 207.608