Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00381 ATGGAGGGTATGGCAAACAGTAATGGTGATTCCAATGGGGAGAATGGGTTGTTGGCAGTGTTTGGTGGCAATGAATTTGGTGGCGGCGGCGGTGGTGAGGGTGGTGGCAAATTGGAGGAGGTGATTCTGAAGAAGGGTCCTTGGACAGCTGCAGAAGATGCTGTTCTCATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCCAACCATTTGAGGCCCAATTTGAAAAAAGGTGCATTCTCTCCTGAGGAAGAAAAGCTCATCATTGAACTACATTCACAATTTGGCAACAAGTGGGCCAGAATGGCTGCTCTGTTGCCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGACAAGGTCTCCCTCTCTATGCAGATGAGAATGATCACCATTGTTCCACAACACCAAATCCTTCTCCATGCTTCACACAAACAGGATCAAACCCTAATAACAATCTCACAAACTTTGAGTTCTTCAAACAAAGCCACCACCAACACTATCATCATCAACAACAAGAGCAACAACACTCACAACAACAACCTCTATCTCCATCTCCAACTCAACATTCCCCTCTGAGTTCCCCTTTCCATCACAGACAACCCTTCACCACTTCTTCACCTCTCACTTTCTTAGACCAGTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCTCTCTCTCCTTCACCTTCCAAAGACCAGAACCACTCCTATGCACCCCTCTTCGCTTCAAACGCTACCGTGCCTCTTCAAGCTACAACCCCCTCCCTGACCTTCCTCTCACAACCCAATTCCCTCATCTTGATGCATTCAGATTCCCAGTTTCTTCAGGTTTCTCTCCATATTTTCAACCATCTTTCTTAGAATCTGACCGAGGCATTTCTTCTTCCTCCTCCTTCCAACCCAAGTTGGATCTCCCTTCAAGCCAGTTCTACAAACCACCCCAAGAGCAAGACATTAAGCTTGACATTGATTTCAACGACCCTTCATTCCAAACCGGTAGCGGATTGCTGGGGGGTCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGTCAGAACTCAAAGAAACGACCCCACTTGAGTTTAAACGAGGGAAATGATTTTTTCGATGCATGCCAAAGCTTTGAGGACTTTCCATCTAGCTCGCTTTACTGGCCTTCTTCTGCATCAGCAGCAAAAGCAAAGGAAGAAGCACCAGACTTGAGCAAGTTCACGAATGAAGAGTTGTCATCATTGCGTACGGTGATTCCATCTTCCAACACACAGGGTCATGACTGGCTCAACAATGGCGATCCAGAAGGGTTGAATGTGCAACCCTGTGACAGTGGCATGACAGATGACAACTTTGGAGTTGATTTGAAGCCTGTGGCTTCATTGTTTCCTCTCACCAACACCACAAACCATAACGAAAACCAAGTCCAACTTAGCAAAAACTACGTTTTGGCTGCTGGAAGTAAATTCCAGAAAACTTATCATTTGTCGGAAATTTGGACATTGATTGCTCGTAGCAATTTCTTCATGGGCAACGATTTTTAG 1623 0.4615 MEGMANSNGDSNGENGLLAVFGGNEFGGGGGGEGGGKLEEVILKKGPWTAAEDAVLIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIELHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYADENDHHCSTTPNPSPCFTQTGSNPNNNLTNFEFFKQSHHQHYHHQQQEQQHSQQQPLSPSPTQHSPLSSPFHHRQPFTTSSPLTFLDQSPLPLSSSSPSSLSFTFQRPEPLLCTPLRFKRYRASSSYNPLPDLPLTTQFPHLDAFRFPVSSGFSPYFQPSFLESDRGISSSSSFQPKLDLPSSQFYKPPQEQDIKLDIDFNDPSFQTGSGLLGGLLLEAQALASGQNSKKRPHLSLNEGNDFFDACQSFEDFPSSSLYWPSSASAAKAKEEAPDLSKFTNEELSSLRTVIPSSNTQGHDWLNNGDPEGLNVQPCDSGMTDDNFGVDLKPVASLFPLTNTTNHNENQVQLSKNYVLAAGSKFQKTYHLSEIWTLIARSNFFMGNDF 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00381 540 Pfam Myb-like DNA-binding domain 98 141 IPR001005 -
Vian6g00381 540 Pfam Myb-like DNA-binding domain 45 92 IPR001005 -
Vian6g00381 540 Gene3D - 100 146 - -
Vian6g00381 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 147 IPR017930 -
Vian6g00381 540 Gene3D - 44 97 - -
Vian6g00381 540 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 92 IPR017930 -
Vian6g00381 540 MobiDBLite consensus disorder prediction 202 246 - -
Vian6g00381 540 SUPERFAMILY Homeodomain-like 44 139 IPR009057 -
Vian6g00381 540 CDD SANT 47 92 IPR001005 -
Vian6g00381 540 ProSiteProfiles Myb-like domain profile. 93 143 IPR001005 -
Vian6g00381 540 CDD SANT 100 141 IPR001005 -
Vian6g00381 540 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 461 - -
Vian6g00381 540 SMART sant 97 145 IPR001005 -
Vian6g00381 540 SMART sant 44 94 IPR001005 -
Vian6g00381 540 FunFam MYB-related transcription factor 44 97 - -
Vian6g00381 540 MobiDBLite consensus disorder prediction 156 177 - -
Vian6g00381 540 FunFam Transcription factor GAMYB 100 146 - -
Vian6g00381 540 MobiDBLite consensus disorder prediction 160 177 - -
Vian6g00381 540 MobiDBLite consensus disorder prediction 192 246 - -
Vian6g00381 540 ProSiteProfiles Myb-like domain profile. 43 92 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00381 Vian-Chr6 16617365 16628393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00381 18 166 MYB Transcription Factor Family AT4G26930 68.421 6.69e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian6g00381 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00381 - - vun:114188481 759.599