Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00379 ATGCAATTATCCTATTCCATGTTTTCCCTCTCAAAATCCAACTTCTCTCCTGTTCGCCCCACCCTCCCTCCGGTTCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCCACACCGTCCAGACCACTCAAAAGATCACCGAAGCTATGAAGCTCGTCGCCGCCGCTAGGGTCCGCCGCGCTCAGGAGGCCGTCGTCAACGGCCGCCCCTTCGCCTCAAACCTCGCAGAAATGCTGAACGACATCACCCAGCGCCTAAAAAGCGACGACGTTTCCACCCCCCTCACTGATGCCAGACCCGTCAAGACCGTCGCCCTCGTCGTTTTCACCGGCGACCGCGGCCTCTGCGGCGGTTTCAACAAATGGGTAATAAAAAAAGCCGTCACCCGAATCGAGGAGCTGAAGAAACTCAATCTGGAATGCGTTGTTATAAGCGTAGGCAAAAAGGGTAACTCGTATTTTACTCACAACAATGAAAGGAAACACCCTTTTGTTAAAGTCGACAGCTTTATCGAAATTGGAGGTTTTCCCACAGCAAAGGAGGCTCAGGTCATTGCTGATGATGTTTTCTCATTGTTTGTTAGTGAGGAGGTGGATAGAGTCGAACTTGTGTACACTAGGTTTGTTTCACTGGTTAGGTTTGAACCTGTGGTTCAGACTTTGCTGCCTCTGGGGGAGGTTTATGATGTGAAAGATGATGTTTTTAGGTTGAGTTCTAAGGAGGGGAAGCTGGCTGTGGAGAGGGATGTTGTGAGGTTGAGGAAAGAGGGTGAGGTGTTTTCCCCTCTTATGGAGTTTGAGCAGGATCCTGTTCTCATTCTTGATGCCATGTTACCTCTTTATTTGAATAGTCAGATTTTGAGGGCGTTGCAGGAGTCTGTAGCTAGTGAGCTTGCTGCTAGGATGGGGGCCATGGCTTCTGCCACCGATAACGCTGTTGAATTGAGTAAAAGACTTTCGGTTGAATACAACCGGGAGCGGCAGGCGAAGATTACAGGGGAGTTGCTGGAGATTGTGGCTGGAGCCGAGGCTCTTAGACCAATTGACTTATGA 1050 0.5057 MQLSYSMFSLSKSNFSPVRPTLPPVRCGIRELRQRIHTVQTTQKITEAMKLVAAARVRRAQEAVVNGRPFASNLAEMLNDITQRLKSDDVSTPLTDARPVKTVALVVFTGDRGLCGGFNKWVIKKAVTRIEELKKLNLECVVISVGKKGNSYFTHNNERKHPFVKVDSFIEIGGFPTAKEAQVIADDVFSLFVSEEVDRVELVYTRFVSLVRFEPVVQTLLPLGEVYDVKDDVFRLSSKEGKLAVERDVVRLRKEGEVFSPLMEFEQDPVLILDAMLPLYLNSQILRALQESVASELAARMGAMASATDNAVELSKRLSVEYNRERQAKITGELLEIVAGAEALRPIDL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00379 349 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 28 344 IPR035968 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 PRINTS ATP synthase gamma subunit signature 322 343 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 PRINTS ATP synthase gamma subunit signature 291 310 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 PRINTS ATP synthase gamma subunit signature 100 119 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 PRINTS ATP synthase gamma subunit signature 198 215 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 ProSitePatterns ATP synthase gamma subunit signature. 330 343 IPR023632 -
Vian6g00379 349 Hamap ATP synthase gamma chain [atpG]. 26 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 FunFam ATP synthase gamma chain, chloroplastic 27 94 - -
Vian6g00379 349 PANTHER ATP SYNTHASE GAMMA CHAIN 25 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 NCBIfam ATP synthase F1 subunit gamma 29 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 Pfam ATP synthase 29 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Vian6g00379 349 FunFam ATP synthase gamma chain 93 224 - -
Vian6g00379 349 FunFam ATP synthase gamma chain, chloroplastic 239 344 - -
Vian6g00379 349 Gene3D - 95 224 - -
Vian6g00379 349 Gene3D ATP synthase, gamma subunit, helix hairpin domain 243 344 - -
Vian6g00379 349 Gene3D ATP synthase, gamma subunit, helix hairpin domain 28 94 - -
Vian6g00379 349 CDD F1-ATPase_gamma 29 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00379 Vian-Chr6 16606921 16607970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00379 5 345 Primary Pumps ATPases AT1G15700 64.789 1.75e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00379 K02115 - gmx:100797879 557.755