Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00374 ATGGGTTCTTGTCTAACTAAAGATTCAGAACCAGAACGCAATGGTTACAGACATGCTGCGACAGGTGGTGTGCACACCCAGAAGACTCACGAACCTTTGGTCAACCAATCAAGAGTTCCTGCAAATCAACCATATCATATACAGGAAAAGCATACTGCATCCACTGCTCAGACAGTGCCTCAGATACCATGGAAGCCTTCTGGTCCTGCCCCCAGTCCTAAACCTGTGGCTAGTGTTAAGCAAGACACAATTCTAGGGAAGCAATTTGAAGATGTGAAGCAGTTCTACACACTTGGAAAGGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTTTGCACTGAGAATTCAACTGGGATTCAGTATGCCTGCAAGTCTATTTCTAAGAGGAAACTTGTGAGTAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAACCCAACATTGTTGAGTTCAAAGGGGCTTATGAGGATAGGCAATCAGTTCATGTTGTGATGGAGCTGTGCGCTGGTGGGGAGCTTTTTGATAGGATTATCGCCAAGGGGCATTACAGTGAGAGGGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTAGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAGGGATGAAAATGCACTACTCAAGGCAACAGATTTTGGTTTATCCGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAAGAAATAGATATATGGAGTGCAGGAGTCATATTATATATCTTACTTAGTGGCGTCCCTCCATTTTGGGCTGAGTCTGAGAAGGGAATATTTGATGCCATACTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCAAACATTTCAAACAGTGCCAAGGATCTGGTTCGTAAGATGCTCATACAGGATCCAAAGAAACGTATAACCTCTGCTCAAGTTCTTGAGCACCCATGGATTAAAGATGGAAATGCTCCAGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTAAAGGCGGGATTGCAAAGACTTGGCTCAAAGCTTACAGAAGCTGAAGTGAAACAGCTTATGGATGCTGCTGACGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACTATGCATAGACACAAGTTAGAAAGAGATGACCAACTCTTCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAGCTGGAATCAGCCATGAAAGAATATGGATGGTAG 1509 0.4241 MGSCLTKDSEPERNGYRHAATGGVHTQKTHEPLVNQSRVPANQPYHIQEKHTASTAQTVPQIPWKPSGPAPSPKPVASVKQDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCTENSTGIQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAESEKGIFDAILEGHIDFESQPWPNISNSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGYITRDELESAMKEYGW 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00374 502 CDD EFh 401 460 IPR002048 GO:0005509
Vian6g00374 502 FunFam Calcium-dependent protein kinase 1 98 181 - -
Vian6g00374 502 Pfam EF hand 473 499 IPR002048 GO:0005509
Vian6g00374 502 ProSiteProfiles EF-hand calcium-binding domain profile. 396 431 IPR002048 GO:0005509
Vian6g00374 502 SUPERFAMILY EF-hand 377 500 IPR011992 -
Vian6g00374 502 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Vian6g00374 502 MobiDBLite consensus disorder prediction 1 78 - -
Vian6g00374 502 FunFam calcium-dependent protein kinase 1 182 360 - -
Vian6g00374 502 Pfam Protein kinase domain 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00374 502 Pfam EF-hand domain pair 401 461 IPR002048 GO:0005509
Vian6g00374 502 ProSitePatterns EF-hand calcium-binding domain. 481 493 IPR018247 -
Vian6g00374 502 ProSiteProfiles EF-hand calcium-binding domain profile. 468 502 IPR002048 GO:0005509
Vian6g00374 502 MobiDBLite consensus disorder prediction 28 62 - -
Vian6g00374 502 Gene3D - 361 502 - -
Vian6g00374 502 ProSiteProfiles Protein kinase domain profile. 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00374 502 PANTHER SERINE/THREONINE-PROTEIN KINASE 89 495 - -
Vian6g00374 502 FunFam Calcium-dependent protein kinase 1 361 502 - -
Vian6g00374 502 CDD EFh 472 502 IPR002048 GO:0005509
Vian6g00374 502 SMART serkin_6 96 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00374 502 CDD STKc_CAMK 95 353 - -
Vian6g00374 502 Gene3D Phosphorylase Kinase; domain 1 98 181 - -
Vian6g00374 502 Gene3D Transferase(Phosphotransferase) domain 1 182 360 - -
Vian6g00374 502 Coils Coil 418 438 - -
Vian6g00374 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Vian6g00374 502 SMART efh_1 436 464 IPR002048 GO:0005509
Vian6g00374 502 SMART efh_1 400 428 IPR002048 GO:0005509
Vian6g00374 502 SMART efh_1 472 500 IPR002048 GO:0005509
Vian6g00374 502 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524
Vian6g00374 502 ProSitePatterns EF-hand calcium-binding domain. 409 421 IPR018247 -
Vian6g00374 502 SUPERFAMILY Protein kinase-like (PK-like) 95 375 IPR011009 -
Vian6g00374 502 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00374 Vian-Chr6 16299707 16305945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00374 1 501 EF-hand Containing Proteins AT3G20410 72.973 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vian6g00374 Pkinase 1.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00374 K13412 - gmx:547888 956.051