Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00334 ATGTCAAGTGGAGGAACATACTGGTGTTACACATGCAGGCAGCCAATCAGGATTGCTGGGAGGGATGCCATTTGCCCTTACTGCAATGAAGGCTTCTTGCAAGAACTTGATGACGTGCAAGGGGCAGTGGGGCAAAGAGGTTCTGAACCAAGAAATGGGTTCAGAGATGCTGTTGATAACTTCATGAGGCAGATAATGGGTGGAAGATACATAAACTTTGGTATTCGAATTGGCAGGTCTGGTTCTACCCAACTTCCTCAACGGACTTGGAGTGTGTTTATATTTCCTAGTCAAGAGTCTAGTGCTGATCTGGAAGAATTCTCTTATCAACACGTTACACATTACCAGTTTGGTGCGTCACAATCTTCAATTAATGCAGTGCCAACTATTAAGATCACGCGTGAACAGCTAAATTTTGATTCAGTGTGTCCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACGTTTACCACTCAGACTGTATTGTTCTATGGTTAGTTCGCCATAACTCGTGTCCTGTTTGCCGAAGAAAGCTGCTTCCTGAAAGACATTCTAGTTCTCGTGGTAGTCAAATTTGGGGAAGAAATCATGCCAGTGATACTCAATCGTTTATGCTGAGACTGGGGATACTACTTTTCTATAACTCTTTGACCAGAACACAGGCAGGAATTAACCGAGTTTCATTTTTTCCCGTGGACAAAGATAACTACGGACTACTCAAGAAAACGTAA 756 0.4312 MSSGGTYWCYTCRQPIRIAGRDAICPYCNEGFLQELDDVQGAVGQRGSEPRNGFRDAVDNFMRQIMGGRYINFGIRIGRSGSTQLPQRTWSVFIFPSQESSADLEEFSYQHVTHYQFGASQSSINAVPTIKITREQLNFDSVCPVCIERFEVGSEARKMPCDHVYHSDCIVLWLVRHNSCPVCRRKLLPERHSSSRGSQIWGRNHASDTQSFMLRLGILLFYNSLTRTQAGINRVSFFPVDKDNYGLLKKT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00334 251 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Vian6g00334 251 Pfam Ring finger domain 143 184 IPR001841 -
Vian6g00334 251 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Vian6g00334 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 189 IPR013083 -
Vian6g00334 251 SUPERFAMILY RING/U-box 123 191 - -
Vian6g00334 251 PANTHER SI:CH211-59O9.10 112 189 - -
Vian6g00334 251 SMART ring_2 143 183 IPR001841 -
Vian6g00334 251 FunFam E3 ubiquitin-protein ligase RNF181 108 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00334 Vian-Chr6 11792688 11794768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00334 119 184 C3H Transcription Factor Family AT1G68180 56.061 3.86e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00334 K11982 - gmx:100815972 276.944