Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00331 ATGGATCGCAGAGATAATGGTAAACAAGCAGTTTCTGATCACGTTTTGGATTCTTGCACGAAAGAGAAGATGAAGAGATCCGTTTTGGGTTCTTGCAAAGCTGAAGTTGAATCAGTGGCGGATGAGGAAAACCCTTCCCCAAAACTGAGTCAGTGTGATATCTGCCTCAAGATTTTTGGCTGCGGCAAGGCTTTAGGTGGTCACAGAAGATCCCACTTTATGAAACAGCAGCAACAAAAGAAGGTAAAGACCCGTTTCACTGATAATCACACATCAAAACCTTCTGGTGATAATAACATTAGGGTTATCTGTGATTTTGACGATGATGATGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCCACCAAGAATGCTTTGTTTGGTCACATGCGGTCTCATCCTGAGAGACCATGGAGGGGTGTGTCCCCTCCTACTCAAAAGAACTCATCTTCTCCTTCTTCTTCTTACTACTATTCTTCTTCTTCTTCCTTCAATTCTGATTCAATGGAGAAGAACAAGGACGATCACGATGTTGATGATGGTGGCGACCGACTGATCTCACTTTATGAACATCGCAGAAATGAGATTGATCTTTTAATGTGTACTTCACCCAGCTGGCTTTGTAAAGGTACAAGAGGCAGAAGCTCTATCGGTGCGTATCAGGCTGCTGAGACTCTTTTCTACATGAGTTGTTCTAAGTATTTTTCTAGTCACGAGCGGAATAGGGTTTTCCCCAAGAAGGATGAAGTGCCGCCAAAGAGTGCCCCAACCCTAATCAAGCAGTGCAAAAGGAAGACTTTTGAATCGTCACCCAGTAAGAAAGATAAGGTGAAGAAGATAAAGTTTTTATTTAAAGGTGAATTGAATTTGGGAAGCACGTCTAATGGGGTTGGGGAATGTGATGGTGAGGGTAATAGGCTGAACAGGTGCAAGGGTTTATCTGAATCTGGGGTTGAGCATAACCATGATGAGAAGAAGATGAAGAGTTTTGATGATTTGAATGGTGAATCTGTTACCCCAACTATGCAAGATCATGTTGGTCCTTCTGATGTAAAGAAGATTAATATGGATAAGAAAGGGAAGAACGGTAAGAAATTGGTACTGAATTCAAGGACAAAAGACTCGGAATCTGAGAAAGCAGCAAGTCAAGAGAAAGCAGATTGGTATAAATGTGCTGCATGTGGAAAAAGCTTCAAAACTTTCCAAGGCCTAGGAGGACACAGATCAGTGCACAAAGAGAAGAATACTGTGAGCATTGATGAGCCAAACCCCTCGGAAGCTGTAGCTGAACAAAACAACTCTAGCAGCTCCAGTAACATGAACAAGATGGAGGACCCATTATTTAATGAAACAACCTTAGCCGACCAGCCTTGCCAATCTTCAGGTGTCAAGAAACTGAACTTCGATCTGAATGAGCTGCCTTGTGCCAATGATGAGGACTGA 1449 0.4237 MDRRDNGKQAVSDHVLDSCTKEKMKRSVLGSCKAEVESVADEENPSPKLSQCDICLKIFGCGKALGGHRRSHFMKQQQQKKVKTRFTDNHTSKPSGDNNIRVICDFDDDDGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKNSSSPSSSYYYSSSSSFNSDSMEKNKDDHDVDDGGDRLISLYEHRRNEIDLLMCTSPSWLCKGTRGRSSIGAYQAAETLFYMSCSKYFSSHERNRVFPKKDEVPPKSAPTLIKQCKRKTFESSPSKKDKVKKIKFLFKGELNLGSTSNGVGECDGEGNRLNRCKGLSESGVEHNHDEKKMKSFDDLNGESVTPTMQDHVGPSDVKKINMDKKGKNGKKLVLNSRTKDSESEKAASQEKADWYKCAACGKSFKTFQGLGGHRSVHKEKNTVSIDEPNPSEAVAEQNNSSSSSNMNKMEDPLFNETTLADQPCQSSGVKKLNFDLNELPCANDED 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00331 482 MobiDBLite consensus disorder prediction 73 94 - -
Vian6g00331 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 135 IPR013087 -
Vian6g00331 482 Pfam C2H2-type zinc finger 52 72 - -
Vian6g00331 482 Pfam C2H2-type zinc finger 391 415 - -
Vian6g00331 482 Pfam C2H2-type zinc finger 113 137 - -
Vian6g00331 482 MobiDBLite consensus disorder prediction 406 451 - -
Vian6g00331 482 MobiDBLite consensus disorder prediction 340 384 - -
Vian6g00331 482 SMART c2h2final6 50 72 IPR013087 -
Vian6g00331 482 SMART c2h2final6 113 135 IPR013087 -
Vian6g00331 482 SMART c2h2final6 391 413 IPR013087 -
Vian6g00331 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 391 418 IPR013087 -
Vian6g00331 482 Gene3D Classic Zinc Finger 50 135 - -
Vian6g00331 482 ProSitePatterns Zinc finger C2H2 type domain signature. 393 413 IPR013087 -
Vian6g00331 482 Gene3D Classic Zinc Finger 360 449 - -
Vian6g00331 482 MobiDBLite consensus disorder prediction 144 158 - -
Vian6g00331 482 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Vian6g00331 482 MobiDBLite consensus disorder prediction 422 451 - -
Vian6g00331 482 MobiDBLite consensus disorder prediction 129 158 - -
Vian6g00331 482 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 40 479 IPR044653 GO:0003700
Vian6g00331 482 SUPERFAMILY beta-beta-alpha zinc fingers 389 417 IPR036236 -
Vian6g00331 482 SUPERFAMILY beta-beta-alpha zinc fingers 49 135 IPR036236 -
Vian6g00331 482 MobiDBLite consensus disorder prediction 352 384 - -
Vian6g00331 482 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00331 45 146 C2H2 Transcription Factor Family AT2G26940 37.273 2.06e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian6g00331 zf-C2H2_6 7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00331 - - var:108344105 515.383