Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00329 ATGGATCTTTCTGGGAAAAGGATTTCAGTTTCAGGTGAAGGGAGCAGCAGCAATGGTGGTGCTGGTGGCAGCAACCTTCAGCTTGTCCCTTATTCAGAGAACAAAAAAGTTTGCCCTTTCTGCCAGCGTGAATTCAAATGTGGAAAATCCTTGGGAGGGCACATCAAAGTGCACAAGAAGAGCCGCAGAACCCTCAAGTTTACCCATAAGAAGAAGAGCAACAGAAGGGGGATTGGATCCTCTTCAGCGCTAACAATCCCAACACCCTTGAATGTTGTAAGAGTTTGCGAGATCGTAGCACCACTCAGAATTGTTGAGAATGGAGCAAGTGGTGCTGCGGTTACAACACTCAGAATTCTCGCAAATGGTGCAAGTGGTGTTGAAGAACCACTCAGAATTGATGAAACCGGTGCAAGTGGTGGTGAGATCCATGATATGTCGATGTCCTTGGTGGGGTGCGGATGGAAGACAAAGGGAAGGAGGGGAAGCAACGAAGAGACGGAGAAGTTGATGAGAGCGAATCATTATTCTTATTCCGATGATGAGTACGAGGAATGTGATGTGGAAGACTCGTGTGACGAGGATGACTACGATAACATAAAGTTGAGGAAATGGTTAAGGAGTCGAGGGTACGGAACAGGTGCGCATAAGATCTGTTGGACTAAGAGAATGCTGATGTGCAAAGTCTGCAATCAGTATTTTAGAACTCTGTCTGGTGTGATCAGTCATGTGGATGAGTGTGCCCTAACCAATAGTGAAGTTGAAATGGAAAGGGAGGGAAGTGAAGAGAATGGTAGACTTGAAGTCGATCAAGCTGTTGATAATGCTGTTGGTGAAGTTGTTGCCAAAATGCCTGAAGATGCTCCAGTCACAAAACACAATGGAGTTTCTTCTTCTTCTTCTTCTGTACAACACAAACACCTTCAATTGGATCTCAATCAAACGCCTCCTCCTGAGGAGGATTGA 966 0.4555 MDLSGKRISVSGEGSSSNGGAGGSNLQLVPYSENKKVCPFCQREFKCGKSLGGHIKVHKKSRRTLKFTHKKKSNRRGIGSSSALTIPTPLNVVRVCEIVAPLRIVENGASGAAVTTLRILANGASGVEEPLRIDETGASGGEIHDMSMSLVGCGWKTKGRRGSNEETEKLMRANHYSYSDDEYEECDVEDSCDEDDYDNIKLRKWLRSRGYGTGAHKICWTKRMLMCKVCNQYFRTLSGVISHVDECALTNSEVEMEREGSEENGRLEVDQAVDNAVGEVVAKMPEDAPVTKHNGVSSSSSSVQHKHLQLDLNQTPPPEED 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00329 321 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vian6g00329 321 MobiDBLite consensus disorder prediction 292 311 - -
Vian6g00329 321 MobiDBLite consensus disorder prediction 9 24 - -
Vian6g00329 321 SUPERFAMILY beta-beta-alpha zinc fingers 37 244 IPR036236 -
Vian6g00329 321 MobiDBLite consensus disorder prediction 282 321 - -
Vian6g00329 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vian6g00329 321 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00329 28 66 C2H2 Transcription Factor Family AT2G42410 41.026 9.84e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian6g00329 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00329 - - var:108345409 592.038