Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00323 ATGGCTATGGCAGCCCCTGGGCAACTCAACGTGAACGAGTCACCGTCGTGGGGGTCCAGAAGCGTCGATTGCTTTGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAAGTTTACATGGCTAGAGAGATCAAAACTGGCGAAATTGTTGCTCTGAAAAAGATACGAATGGACAATGAGAGAGAAGGGTTTCCTATAACAGCTATTCGTGAAATCAAAATTCTGAAGAAGCTACACCATGAAAATGTAATCAAGTTGAAAGAAATTGTGACTTCTCCAGGACCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGACCGACCAGGGATGAGATTCACAGTTCCCCAAATTAAGTGCTACATGCGACAGCTTCTGACTGGGCTGCATTATTGTCATGTAAATCAAGTACTTCACCGTGATATCAAAGGTTCAAATCTTCTCATAGATAATGAAGGTAATCTGAAACTTGCTGATTTTGGATTGGCACGGTCATTTTCTAATGAGCACAATGCAAATCTTACTAATCGTGTCATCACATTATGGTACAGACCCCCTGAGCTGCTGCTTGGGACAACGAGGTATGGGCCAGCTGTAGACATGTGGTCTGTGGGGTGCATCTTCGCAGAGCTTCTTCATGGGAAGCCTATATTTCCTGGAAAAGATGAGTTTAAGCCAACAAGACCAATGAAAAGACGTCTACGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTGGAGAAGATGCTGACACTTGATCCTGCTCAGAGAATTACTGCGAAGGATGCGCTCGATGGTGAATACTTCTGGACTGATCCATTACCATGTGATCCTAAGAGTTTACCCAAATATGAGTCATCTCATGAGTTCCAAACCAAGAAAAAGCGCCAGCAGCAACGACAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCTCAACAGCATTCACGCCTGCCCCCTATTCAGCAGGCTGGACAACAGCACCCTCAAATGCGGCAAGGTCCTAACCACCCTATTCACGGGTCTCAACCAGGAGTTACGGCTGGGCCTAGCCATCATTATGGGAAGCCTCGAGGTCCCTCTGGTGGGCCTGGACGATATCCTCCTGGTGGAAACCCTGGTGGGGGATACAATCACCCAAATCGTGGAGGTCAAGGAGGAGGAGGTGGTAGTTATGGCAGTGGGCCGTATCCTCCCCAAGGACGGGGTGCATCTTATGGTTCAAGTGGTATGCCTGGTGGTTCCAGTGGCGGTCCTCGTGGTGGGGGTGGTAGTGGCTATGGTGTTGGAGCTCCAAATTATCCTCAAGGTGCTCCTTATGGTGGATCAGCAGCAGGACGTGGTTCAAACATGATGGGGGGTAACCGCAACCAACAGTATGGTTGGCAGCAGTAA 1476 0.4749 MAMAAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPAQRITAKDALDGEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHSRLPPIQQAGQQHPQMRQGPNHPIHGSQPGVTAGPSHHYGKPRGPSGGPGRYPPGGNPGGGYNHPNRGGQGGGGGSYGSGPYPPQGRGASYGSSGMPGGSSGGPRGGGGSGYGVGAPNYPQGAPYGGSAAGRGSNMMGGNRNQQYGWQQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00323 491 ProSiteProfiles Protein kinase domain profile. 25 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00323 491 FunFam Cyclin-dependent kinase C-2 12 121 - -
Vian6g00323 491 Gene3D Transferase(Phosphotransferase) domain 1 122 334 - -
Vian6g00323 491 PANTHER CELL DIVISION PROTEIN KINASE 23 300 - -
Vian6g00323 491 CDD STKc_CDK9_like 25 294 - -
Vian6g00323 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Vian6g00323 491 Pfam Protein kinase domain 25 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00323 491 Gene3D Phosphorylase Kinase; domain 1 12 121 - -
Vian6g00323 491 SMART serkin_6 25 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00323 491 MobiDBLite consensus disorder prediction 305 491 - -
Vian6g00323 491 MobiDBLite consensus disorder prediction 307 336 - -
Vian6g00323 491 FunFam Mitogen-activated protein kinase 120 249 - -
Vian6g00323 491 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Vian6g00323 491 MobiDBLite consensus disorder prediction 342 364 - -
Vian6g00323 491 MobiDBLite consensus disorder prediction 477 491 - -
Vian6g00323 491 SUPERFAMILY Protein kinase-like (PK-like) 19 302 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00323 Vian-Chr6 11277406 11298636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00323 1 491 Core Cell Cycle Gene Families AT5G10270 72.814 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vian6g00323 Pkinase 8.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00323 K08819 - gmx:100793565 828.55