Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00320 ATGAGTTTGAGATATGGAAGTGTGAGTTTTGTTGCTTTAGTGCTTTTGCCACTCATGGCTTCTGCAGCTTCAGTTGTGAAGAACCTTCCTGGTTATGAGGGCAACCTTCCTTTCAAGCTTGAAACTGGATACATCGGAGTGGGAGAGGAGGGAGTAAATATATTTCACTTATTTGTTGAATCTCAAAGAAACCCCTTCATTGATCCAGTGCTACTATGGTTTGTTGGAGGTCCAGGTTGTTCTGCACTATCAGCCTTCTTTTTTGAAAATGGGCCTTTAATAATGAATGGTGATAACAGTGGAAACCTTCCAACACTTGAGTTGAACCCATATGGGTGGTCACAGACATTGAATATGCTATACATAGATATGCCAGTAGGTACAGGATTTTCATACTCAGAAACCCAACAAGGCTATTACAGTAATGACACGTTATGGGTTGACCATACTTATGAATTTCTACAAAAGTGGTTTATTGATCATCCAAAGTTTAACTCAAATCCATTCTACATTGGTGGTGGTTCATATTCAGGATTAACCACAGGACCTCTTGTTCAAAAGGTGTATGAAGGTTATAAAGCAAGACACAAGCCACTCATCAACATCAAAGGGTATGTAATTGCGAGCCCAGCTGTTGACCCATTTCAAGAACAAAACATGAAAGTTGTATATGCATACCAAAGGAGTCTTATATCCGAAGTACTCTACAAGTCTATGAAAGAAAACTGTAACGGTGATTATGTAAACATTGATCCACAAAACACAAAGTGTTTCTTAGATTATGAAGCTTATTCGGAGCTAGTTCGTTACATAAACGAACAACAAATCATGGAACCTGTTTGTGTTACCACGCCTGGTTTGAAACGACAAATGCTACAAGAACTTCAAGATCCTCCTACATTTTGGTGTAGAAGCTATTATCATATCTTTGTCGACAAATGGGCAAACGATGAAAATGTGAGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGGACAATGGCATACGCCCAAACTTTTAAAAACTCAGTACAATATTATCGGAATCTCACAAACGCCAACCTTGAAGCTCTCGTTTACTGTAGTGATCTTGATATGAGTATTCCACATCTGGGTACACAACATTGGATCAATTCGTTCAACATGACCATACGTGACAAATGGCGTGCATGGTTTGTCGACGGTCAAGTTGCCGGGTACACAGAACTGTATAAAATGAAAGAAGATCACTTCTTTACATATGTAATCGTGAAGGGTGCTGGACATGTGGCTCAAACATTTAAACCCAAGGAAGTTTATAATTTGATCAATAGATGGTTTTCATTTTCTCTTATCTAA 1359 0.3893 MSLRYGSVSFVALVLLPLMASAASVVKNLPGYEGNLPFKLETGYIGVGEEGVNIFHLFVESQRNPFIDPVLLWFVGGPGCSALSAFFFENGPLIMNGDNSGNLPTLELNPYGWSQTLNMLYIDMPVGTGFSYSETQQGYYSNDTLWVDHTYEFLQKWFIDHPKFNSNPFYIGGGSYSGLTTGPLVQKVYEGYKARHKPLINIKGYVIASPAVDPFQEQNMKVVYAYQRSLISEVLYKSMKENCNGDYVNIDPQNTKCFLDYEAYSELVRYINEQQIMEPVCVTTPGLKRQMLQELQDPPTFWCRSYYHIFVDKWANDENVRKALHVREGTKEEFLRCNRTMAYAQTFKNSVQYYRNLTNANLEALVYCSDLDMSIPHLGTQHWINSFNMTIRDKWRAWFVDGQVAGYTELYKMKEDHFFTYVIVKGAGHVAQTFKPKEVYNLINRWFSFSLI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00320 452 Gene3D - 304 450 - -
Vian6g00320 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Vian6g00320 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Vian6g00320 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Vian6g00320 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Vian6g00320 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 436 IPR001563 GO:0004185|GO:0006508
Vian6g00320 452 Gene3D alpha/beta hydrolase 19 291 IPR029058 -
Vian6g00320 452 Pfam Serine carboxypeptidase 30 448 IPR001563 GO:0004185|GO:0006508
Vian6g00320 452 SUPERFAMILY alpha/beta-Hydrolases 26 448 IPR029058 -
Vian6g00320 452 FunFam Serine carboxypeptidase-like 19 19 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00320 Vian-Chr6 11174676 11198623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00320 20 53 Calmodulin-binding Proteins AT2G22960 58.824 4.02e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00320 K16296 - gmx:100798023 547.354