Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00312 ATGAATGGGCAGAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGCTAGGAATTCTGAGACTGGGGAGCCTGTGGCTCTTAAGATTATTGATAAGGAGAAGGTTCTCAAGTATATGCAAGCTGAGCAGATCCAGCGAGAAATAGCCACAATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTATATGAGGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAACTTTTTCATAAAATTTTAAACAGTGGACGGATAAGTGAAAAGGAAGCACGTAGATATTTCCAGCAGCTTATCAATGCGGTTGACTATTGCCATAGCAGGGGTGTCTATCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTTTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACCAATCTTTTGAACCTATATAAAAAGATTTCAGCTGGTGAATTTACATGCCCCCCCTGGTTTTCATTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTCGTATCACTATATCGGAGATTATGCATGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTCGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGACCATATTTAAAGACTGTGAAGTATGTTGA 897 0.4069 MNGQKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKIIDKEKVLKYMQAEQIQREIATMKLIKHPNVVQLYEVMGSKTKIYIILEFVTGGELFHKILNSGRISEKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDAFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAGEFTCPPWFSFSARKLITRILNPNPVTRITISEIMHDEWFKKEYKLPVFEETKERNTDDIETIFKDCEVC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00312 298 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00312 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vian6g00312 298 Gene3D Transferase(Phosphotransferase) domain 1 3 297 - -
Vian6g00312 298 CDD STKc_SnRK3 12 267 - -
Vian6g00312 298 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vian6g00312 298 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00312 298 PIRSF ILK 3 266 - -
Vian6g00312 298 FunFam Non-specific serine/threonine protein kinase 6 297 - -
Vian6g00312 298 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00312 298 SUPERFAMILY Protein kinase-like (PK-like) 9 275 IPR011009 -
Vian6g00312 298 FunFam Non-specific serine/threonine protein kinase 4 92 - -
Vian6g00312 298 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00312 Vian-Chr6 10733163 10736456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00312 4 296 CBL-interacting serine-threonine protein kinases AT2G26980 81.911 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vian6g00312 Pkinase 2.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00312 - - cpap:110810700 523.472