Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vian6g00311 | ATGAAGAAATCCACAAGGAAGCCTGTGGGAAGGCCCCCAGGCTCCAAGAACAAGTCAAGCTCCAGCACTCAACCAGTGTCCCAACCTCTGGAGCCCTCCATGAAGGTCTTTTCTTTTAGGGTACCCCCAAACAGGGACATCATGGAGTTCATCTTGAACATTGCTCATAATGGTCATGTCAGTGTGGCCATCATTAGTGCCTCTGGCACAGTCAACAATGTGACACTTCACAACTCAACCATGCAGCATGGTCCCTTCACTTTGCTCTCCCTTGCTGGTTCCTACTTATACAACAACCTCTATACCCTTTACCCTGGAGCCACCCCTCCCTTTCCCCTATCTTTCACCATCAACCTCTCAACGCCTAATGGCCACATATTCGGAGGTGTCATTAGTGGTAGCGTCATTGCCCGTCAAGATGTTAAACTCACCGTCTCCACCTTCAAGAACAGTGGTATCCTCAAGTTTCCTCCAGATCTCGATAACAATAAAAACAATAACAACAACACTACCACCAACAACAACACTGAATGA | 534 | 0.4757 | MKKSTRKPVGRPPGSKNKSSSSTQPVSQPLEPSMKVFSFRVPPNRDIMEFILNIAHNGHVSVAIISASGTVNNVTLHNSTMQHGPFTLLSLAGSYLYNNLYTLYPGATPPFPLSFTINLSTPNGHIFGGVISGSVIARQDVKLTVSTFKNSGILKFPPDLDNNKNNNNNTTTNNNTE | 177 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vian6g00311 | 177 | Gene3D | - | 33 | 169 | - | - | |
| Vian6g00311 | 177 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 36 | 149 | IPR005175 | - | |
| Vian6g00311 | 177 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 33 | 153 | - | - | |
| Vian6g00311 | 177 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 5 | 171 | IPR014476 | GO:0003680 | |
| Vian6g00311 | 177 | ProSiteProfiles | PPC domain profile profile. | 31 | 170 | IPR005175 | - | |
| Vian6g00311 | 177 | MobiDBLite | consensus disorder prediction | 156 | 177 | - | - | |
| Vian6g00311 | 177 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Vian6g00311 | 177 | MobiDBLite | consensus disorder prediction | 160 | 177 | - | - | |
| Vian6g00311 | 177 | CDD | DUF296 | 35 | 137 | IPR005175 | - | |
| Vian6g00311 | 177 | MobiDBLite | consensus disorder prediction | 14 | 29 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vian6g00311 | Vian-Chr6 | 10641382 | 10641915 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vian6g00311 | 6 | 163 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 32.530 | 2.97e-19 | 80.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vian6g00311 | - | - | vun:114188423 | 295.434 |