Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00309 ATGGGAAACACTTGTGCGAAAGGAAAACCGATTGCTCATGTATCTTCCTCCAATTTTTCTGGAAACAAGAGGCCTGCAAGTAAGCCAAGGCAGGATTCAAATTCTTCTGCACAAAATCATGCTCCAAAAACTTCAGAATCAAATGTTCCCGTATCCATCTCTAGTAGCTTAAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAAAATTTCAGGAAAGAAAATTTGATCGGAGAGGGAGGATTTGGGCGTGTCTTCAAAGGATGGATTGATGAGAATTCATATGGTCCCACAAGACCAGGCACTGGAATTGTGGTGGCCATTAAAAATCTTAAACCAGAAAGTTTTCAAGGCCACAGCGAATGGCTTGCAGAAGTCAGTTATCTTGGGCAGCATCAGCATGACAATTTGGTGAAACTTATTGGTTATTGTTTGGAGGGTAAAAACAGGCTTCTGGTTTATGAGTTCATGCAGAAAGGAAGTTTGGAGAATCATTTATTCCGAAAAGGTGTTCAACCTATGGCTTGGGTTACAAGGGTCAACATTGCAATTGGTGTAGCAAGAGGACTAGCATTCTTACATTCCCTGGATCAAAATGTCATCTTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCAGACTTCAATGCAAAGCTTTCAGATTTTGGCTTGGCAAGGGATGGTCCAACTGGAGATAATACTCATGTTTCAACTCGAGTAATAGGAACTCAAGGCTATGCTGCACCAGAGTATGTTGCTACAGGTCACCTGGCACCAAGAAGTGATGTATACAGCTTTGGTGTAGTGTTGTTAGAGTTGCTTACTGGTAGGCGTGCTGTGGAAGATGACAGACCTGGATTTTCAGATGAAACCTTGGTGGATTGGGCAAAGCCATTTTTGAGTGACAACAGAAGAGTTTTGAGAATAATGGACACAAGGTTGGGGGGTCAATACTCTAAGAAAGGGGCAATGGCTGCAGCTGCACTTGCACTGCAATGCCTCAACACTGACCCCAAATTTAGACCCCCTATGGTGGAAGTTCTAGCAGCATTGGAAGTGCTTAATTGCTCAAACTCATTCTCAAGAACACCACCAAGACCTGAGAGCCATGCAACCAAAAATTCTGCTGGTCATTCTCAAAAGTAA 1152 0.4262 MGNTCAKGKPIAHVSSSNFSGNKRPASKPRQDSNSSAQNHAPKTSESNVPVSISSSLKSFSLNDLKEATKNFRKENLIGEGGFGRVFKGWIDENSYGPTRPGTGIVVAIKNLKPESFQGHSEWLAEVSYLGQHQHDNLVKLIGYCLEGKNRLLVYEFMQKGSLENHLFRKGVQPMAWVTRVNIAIGVARGLAFLHSLDQNVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLAPRSDVYSFGVVLLELLTGRRAVEDDRPGFSDETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAMAAAALALQCLNTDPKFRPPMVEVLAALEVLNCSNSFSRTPPRPESHATKNSAGHSQK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00309 383 SUPERFAMILY Protein kinase-like (PK-like) 46 361 IPR011009 -
Vian6g00309 383 SMART serkin_6 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00309 383 MobiDBLite consensus disorder prediction 10 50 - -
Vian6g00309 383 Gene3D Transferase(Phosphotransferase) domain 1 158 369 - -
Vian6g00309 383 CDD STKc_IRAK 78 354 - -
Vian6g00309 383 FunFam Serine/threonine-protein kinase BIK1 38 157 - -
Vian6g00309 383 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 158 366 - -
Vian6g00309 383 Pfam Protein tyrosine and serine/threonine kinase 75 351 IPR001245 GO:0004672|GO:0006468
Vian6g00309 383 MobiDBLite consensus disorder prediction 361 383 - -
Vian6g00309 383 ProSiteProfiles Protein kinase domain profile. 72 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00309 383 Gene3D Phosphorylase Kinase; domain 1 47 157 - -
Vian6g00309 383 ProSitePatterns Protein kinases ATP-binding region signature. 78 110 IPR017441 GO:0005524
Vian6g00309 383 MobiDBLite consensus disorder prediction 1 50 - -
Vian6g00309 383 PANTHER OS01G0588500 PROTEIN-RELATED 37 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00309 Vian-Chr6 10514212 10516167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00309 34 374 Glycoside Hydrolase AT3G07070 45.714 1.74e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian6g00309 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00309 - - vum:124843429 736.102