Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00295 ATGCTTGCATTCTCTGTAAAAATTCTAATAAACACAGCTTCAGTTGTGGCTACTACAAGGAGGTTCCCTTCGGATTCCGGTGCCTTTGTCGACTGGTCAGCGACGCCTTCCGCCGTTTCGGGCCGCGGCGACGACCTCTCTCTCGGCTTCAATGCATCCTCCGCCGCCGCGCACGGCGGCGCATCCATGTGGCCCGTGGCGTCGAGATCATTCAACCACAACCTTTCACCCCACCACGACATCTTCGTGGTGGCGCCCGCGTCGTCGTTCCATCACCACCACCACAGTGACGCTGTTTTGTCCGATCCAAACAACAACAGTTCCAACGCAACTGCACTCGGCGTCAACGTCTTCCCTCTCCTCACCGCCACGCCATGCCTCACTCCCGAGAGCGAGGGCATAATGGGAAACATCAATAACCACCGCAACAGAATTCAACTATGGCAACCACAGGAATCACCACAGCACCAACACGCCGACGGCGTCTTGGCGGGTAACCACCGTAGCAGAATTCAGTTATGGCAAGAGCACGACGAGTCTCCCCCGCCGCAGCAGCAGCAACAACAACACCCGAACGCGCACGTGCAGGAGCGGGAGGGGAGTGGGAGCGGTGCGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGCCACGCACGTGAAGAGCACTTGGGTGCCAGCCGCGCGCCGGAGGGAGCGCCAGCTCATGGCGGCGACGGCAGCGGTTGGGTCCAGTGGGTCCACTTCCGCCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCGAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCAGCAGAGTTCAAGTGTGTTCGTGTCACTGCAGTGGATGATGGAGATGATGAGTATGCATATCAAGCTGTGGTGAAAATAGGTGGTCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAAGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATCTCGGTGGTGGTGGAAGTGATGGTGGTGGTAGAAATGGGGTTTCTTCTTCATCTCCAATGGTGAATCCTTCTGATGTCTATGCAGCTTCTGCTGGAGTGTTACTGGGAGATTCATCAAACTATGGTAATGCAATAAATTAA 1263 0.5487 MLAFSVKILINTASVVATTRRFPSDSGAFVDWSATPSAVSGRGDDLSLGFNASSAAAHGGASMWPVASRSFNHNLSPHHDIFVVAPASSFHHHHHSDAVLSDPNNNSSNATALGVNVFPLLTATPCLTPESEGIMGNINNHRNRIQLWQPQESPQHQHADGVLAGNHRSRIQLWQEHDESPPPQQQQQQHPNAHVQEREGSGSGASTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAATAAVGSSGSTSATKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEYPNLSELHLGGGGSDGGGRNGVSSSSPMVNPSDVYAASAGVLLGDSSNYGNAIN 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00295 420 MobiDBLite consensus disorder prediction 178 214 - -
Vian6g00295 420 NCBIfam LRP1 C-terminal domain 314 361 IPR006511 -
Vian6g00295 420 MobiDBLite consensus disorder prediction 177 215 - -
Vian6g00295 420 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 88 404 IPR007818 GO:0003700|GO:0006355
Vian6g00295 420 MobiDBLite consensus disorder prediction 257 306 - -
Vian6g00295 420 MobiDBLite consensus disorder prediction 259 306 - -
Vian6g00295 420 NCBIfam putative zinc finger domain, LRP1 type 207 249 IPR006510 -
Vian6g00295 420 MobiDBLite consensus disorder prediction 369 393 - -
Vian6g00295 420 Pfam Domain of unknown function (DUF702) 205 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00295 Vian-Chr6 9949391 9953355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00295 8 400 C2H2 Transcription Factor Family AT5G12330 47.775 9.24e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vian6g00295 DUF702 7.9e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00295 - - gmx:100816514 518.464