Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00290 ATGGAAGAAACAACCGAGATGCAATCAGAAGAAAATAAATTGTCAATGGAGAAAAATAAGAAAAGAAGGCTCAAAACACCTGCGCAGCTTACAGCATTGGAAAGTTTTTATAATGATCACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCTGAAGAGTTAGAATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAGTTGTTGAATGATGAAGTAGGTGCCAATGGACGACAAGATCGTTCAAGTGGTGTTATCCAGGACAGAGGCAGTGGTCTAGTGCAGGATTCATGCGGAAGCACTAAACATGGTGATTATAGGTATCTTGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGAATTTTCGGCTGCAGATATGACCTATGCACACAGAAACCATCATTATGCAGAAAATGATAGTGCAACTGATAACACGTCATCTGAGAGTTGCTCATCTTTGCAAGATCGATTGCTTCCTCAAGGACAGGATCAATATGACATGGAGCCTTCTAGTCATTTGATGCCTAATGGGTCTCTTCCGCCGCTAAATCCTAAGGGTGCAAATAACATGGGGTATAAACCATCAGGGTATTTAAAAGTGAAGGGAGAGATAGAACATGTTTCTATTAGTGCTGTCAAAAAGCAATTAGGAAATCATTTTCAGGAAGATGGACCATTACTTAGTGTTGAATTTGATACAATTCCTCCAGGGGCATTTGAAGGACAAATTGCAGATCTAGCTAATGAAGGGTACTATGCTGCAAATCCTGCTCTTCCAAATTCACCAGAAGTCTCTGCTGGGAAAAAGCAATCCAGTAGCTCAAGATATGATTCATATTTTACCAAATTAAGGTCCCAAGATTCACATATGGTTGGAGGTGACTTTGGCTCTTTGCATGGTCCTGATTTCCAGGATAAGAAACCCCACAAGCAGATAAATCAAAGAGCAAGTTTTCACAGTTTTACCAATCATTTGCCTCACAATAACTCTTCCCTGGATTTGTATGTAGACTCTACTGGGGAAGCATCTGCTTATAATGGTGGTAAAAACCGTAGGATGGGTACTAAGCATGGTTTTGAGGGGATGAGGTCAGACTCGGCTTCCTACCCCAGTGACCACTATGAAGAAAATGCCGTTGCAGTTAAGCAGATAGATTCGCTGTTAGATCTCTACAATAACATCAATCTGAAGAATGTACAAAAGAATGAATATGTAAAATCTAAGCCTTCAAATTCAATACATAAGTCTCAAATTTACTTGAATGCTGAAGAAAAAGGGCTTACAAAAAGGATGGCCAATGAAGAGAAGTTTAATGACGAGAGAAAGTTAAGAAAACAATATCATGTTCCAGATGGAATTAGGGTGCTTTCAAATGAAAAAATGGTTGCAAAGCGAGCTAAAGTTGACCCATTTGAATCATATGATGTTAAACAAACACCTCTTTCTGACCTGGAACCAAGAAAAGTTCAAAGGTCTGCAGCAGAGATGCCATCTAGATTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCGGTGGATTAA 1575 0.3937 MEETTEMQSEENKLSMEKNKKRRLKTPAQLTALESFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKKLLNDEVGANGRQDRSSGVIQDRGSGLVQDSCGSTKHGDYRYLDPKEVESHGLYNHEFSAADMTYAHRNHHYAENDSATDNTSSESCSSLQDRLLPQGQDQYDMEPSSHLMPNGSLPPLNPKGANNMGYKPSGYLKVKGEIEHVSISAVKKQLGNHFQEDGPLLSVEFDTIPPGAFEGQIADLANEGYYAANPALPNSPEVSAGKKQSSSSRYDSYFTKLRSQDSHMVGGDFGSLHGPDFQDKKPHKQINQRASFHSFTNHLPHNNSSLDLYVDSTGEASAYNGGKNRRMGTKHGFEGMRSDSASYPSDHYEENAVAVKQIDSLLDLYNNINLKNVQKNEYVKSKPSNSIHKSQIYLNAEEKGLTKRMANEEKFNDERKLRKQYHVPDGIRVLSNEKMVAKRAKVDPFESYDVKQTPLSDLEPRKVQRSAAEMPSRFSEDETAETSSSVD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00290 524 MobiDBLite consensus disorder prediction 82 106 - -
Vian6g00290 524 SMART HOX_1 18 80 IPR001356 GO:0003677
Vian6g00290 524 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Vian6g00290 524 MobiDBLite consensus disorder prediction 485 524 - -
Vian6g00290 524 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Vian6g00290 524 MobiDBLite consensus disorder prediction 1 27 - -
Vian6g00290 524 MobiDBLite consensus disorder prediction 492 513 - -
Vian6g00290 524 MobiDBLite consensus disorder prediction 7 24 - -
Vian6g00290 524 MobiDBLite consensus disorder prediction 173 199 - -
Vian6g00290 524 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Vian6g00290 524 Gene3D - 8 91 - -
Vian6g00290 524 MobiDBLite consensus disorder prediction 84 106 - -
Vian6g00290 524 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Vian6g00290 524 CDD homeodomain 20 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00290 Vian-Chr6 9364263 9368984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00290 3 524 Homeobox Transcription Factor Family AT4G03250 37.477 4.07e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vian6g00290 Homeodomain 7.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00290 - - gmx:100812697 840.491