Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00289 ATGGGTTTCTTCCCTCCAGATTCTGTGAGTGGTTCACTCCACTCCGTGTCATCCGGAGGATCAGATAGCATGCATGGTCAAATGAAGACAATGCCTGTGGATGCTTTTAGAGTTAGTCTATCAAGTGCAGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGCTGTACTAGGTGGTGGGTCTCACCAAGTTGGGAGTGATTTTGGTGTGAAAATGGATTCTCTGTTGCCGAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCCTGTGGTGGGAAACATGCGGCCTTAGTTACCAAACAAGGTGAAATTTTTTCCTGGGGAGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCGGATGTTCCTCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATTGAACTTGTAGCTTGTGGAGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGTACTTCCAATTATGGTCTTCTAGGGCACGGAAATCAGGTGAGCCACTGGGTCCCAAAAAGGGTAAATGGCCATTTGGAGGGAATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGGACATTTGGTGTTCTGGGTCATGGAGACAGAAAAAGTGTTTCCTTGCCTAGAGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTTCAGGCTGCTTGTGGTGTTTGGCATACTGCCGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTTGTAGCTCTTGTTGAACCTAATTTTTGTCAAGTGTCATGTGGTCATAGTATGACTGTTGCACTTTCTCGATCAGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCAGATGGGAAGCTACCAACCCGTGTAGAAGGAAAGCTGTCAAAGAGTTTTGTGGAAGACATAGCTTGTGGTGCATATCATGTAGCGGTTCTAACTTCAAGGACTGAGGTTTTCACGTGGGGGAAAGGTGCTAATGGTCGTTTAGGCCATGGGGATACTAATGACAGAAGCACCCCAACATTGGTAGAAGCTCTGAAAGACAAGCAAGTAAAAAGTATTGCTTGTGGTACAAATTTCACGGCAGTCATATGCCTGCATAAGTGGGTATGTGGTGTTGACCAGTCTATGTGTTCAGGCTGCCGCCTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTCAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGAAAAACAACCGAAACTGATTCTTCATCTCAGTCCTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGTTCACTTGAGTTTATTGGTAAGGATGACAAATTGGATTCCAGATCTCATAATCAACTTGCTAGGTTTTCTTCAATAGAATCCTTGAAACAAGTGGACAGCAGATCTTCGAAGAAAAACAAAAAGTTGGAATTTAACAGTAGCCGTGTCTCACCTGCTCCAAATAGTGGTTCACAGTGGGGAGCAATGAATATTTCAAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGGATTGTTTCCCGGGCAACATCCCCAATATCTAGACGGCCTAGTCCACCACGTTCAACTACTCCAACCCCAACAGTAGGGGGACTTTCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAATCAATGATAACCTCAGTCAGGAGGTTATTAAATTAAGATCGCAGGTGGAAAACCTGACTCGAAAAGCCCAGCTTCAAGAAGTGGAGTTGGAAAGAACAACTAAACAGTTGAAAGAAGCAATAGCAATTGCAAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTTACTGCCCAGTTGAAGGACATGGCCGAGAGGTTGCCTGTAGGAGTGTCTAGGACTGTCAGATCACCACCCTCTCTTGCTTCCTTTGGCCCAATTCCTGGTTTCAATGACCTTAACAATGCTTCCTTTGATCGATTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACTGGATCCAATAACCAGTTACTTTCAAATGGATCAAGCACCATCATCAACAGGAGTGCAGGTCACATAAAACATAGTCAGTCAGATGCTACTAGCACAGGTCACAACAAACATGGTCAATTAGATGCAGGTAGTAGAAATGGAAGCAAAACAAAGGATAATGAGACTGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAACGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCCGAGAATCGTGGAAGAGTGTATGAGCAGTACAATGTGCGCACGATTGACAAATCGACAATAGGTGTTGGGAGTGAGGACCTGCCTCATTCATGA 2736 0.4357 MGFFPPDSVSGSLHSVSSGGSDSMHGQMKTMPVDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDAVLGGGSHQVGSDFGVKMDSLLPKALESAVVLDVQNIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTSNYGLLGHGNQVSHWVPKRVNGHLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVALVEPNFCQVSCGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEDIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRSTPTLVEALKDKQVKSIACGTNFTAVICLHKWVCGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDSSSQSSMSRRGSVNQGSLEFIGKDDKLDSRSHNQLARFSSIESLKQVDSRSSKKNKKLEFNSSRVSPAPNSGSQWGAMNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTVGGLSSPKIVVDDAKRINDNLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGVSRTVRSPPSLASFGPIPGFNDLNNASFDRLNIQATSPESDSTGSNNQLLSNGSSTIINRSAGHIKHSQSDATSTGHNKHGQLDAGSRNGSKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRGRVYEQYNVRTIDKSTIGVGSEDLPHS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00289 911 Coils Coil 659 735 - -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 229 280 IPR000408 -
Vian6g00289 911 MobiDBLite consensus disorder prediction 627 655 - -
Vian6g00289 911 SUPERFAMILY RCC1/BLIP-II 60 450 IPR009091 -
Vian6g00289 911 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 108 118 IPR000408 -
Vian6g00289 911 Pfam Transcription factor BRX N-terminal domain 710 743 IPR027988 -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 122 173 IPR000408 -
Vian6g00289 911 FunFam PH, RCC1 and FYVE domains-containing protein 1 283 454 - -
Vian6g00289 911 Pfam Unstructured region between BRX_N and BRX domain 752 813 - -
Vian6g00289 911 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 267 277 IPR000408 -
Vian6g00289 911 SUPERFAMILY FYVE/PHD zinc finger 450 520 IPR011011 -
Vian6g00289 911 Pfam FYVE zinc finger 449 515 IPR000306 GO:0046872
Vian6g00289 911 SMART fyve_4 447 516 IPR000306 GO:0046872
Vian6g00289 911 Pfam Regulator of chromosome condensation (RCC1) repeat 173 225 IPR000408 -
Vian6g00289 911 Pfam Regulator of chromosome condensation (RCC1) repeat 122 170 IPR000408 -
Vian6g00289 911 Pfam Regulator of chromosome condensation (RCC1) repeat 292 341 IPR000408 -
Vian6g00289 911 Pfam Regulator of chromosome condensation (RCC1) repeat 398 445 IPR000408 -
Vian6g00289 911 Pfam Regulator of chromosome condensation (RCC1) repeat 344 393 IPR000408 -
Vian6g00289 911 Pfam Regulator of chromosome condensation (RCC1) repeat 229 277 IPR000408 -
Vian6g00289 911 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 453 515 IPR017455 -
Vian6g00289 911 MobiDBLite consensus disorder prediction 564 597 - -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 293 344 IPR000408 -
Vian6g00289 911 MobiDBLite consensus disorder prediction 10 25 - -
Vian6g00289 911 MobiDBLite consensus disorder prediction 582 597 - -
Vian6g00289 911 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 215 225 IPR000408 -
Vian6g00289 911 MobiDBLite consensus disorder prediction 803 828 - -
Vian6g00289 911 MobiDBLite consensus disorder prediction 803 838 - -
Vian6g00289 911 MobiDBLite consensus disorder prediction 1 27 - -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 397 448 IPR000408 -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 60 121 IPR000408 -
Vian6g00289 911 MobiDBLite consensus disorder prediction 774 793 - -
Vian6g00289 911 FunFam PH, RCC1 and FYVE domains-containing protein 1 31 282 - -
Vian6g00289 911 FunFam Putative E3 ubiquitin-protein ligase HERC1 455 523 - -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 174 228 IPR000408 -
Vian6g00289 911 CDD FYVE_like_SF 458 511 - -
Vian6g00289 911 Gene3D - 288 460 IPR009091 -
Vian6g00289 911 ProSiteProfiles BRX domain profile. 837 892 IPR013591 -
Vian6g00289 911 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 30 728 - -
Vian6g00289 911 Gene3D - 184 287 IPR009091 -
Vian6g00289 911 Gene3D - 10 183 IPR009091 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 231 245 IPR000408 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 215 231 IPR000408 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 334 352 IPR000408 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 105 118 IPR000408 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 392 413 IPR000408 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 124 140 IPR000408 -
Vian6g00289 911 PRINTS Chromosome condensation regulator RCC1 signature 174 190 IPR000408 -
Vian6g00289 911 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 345 396 IPR000408 -
Vian6g00289 911 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 522 IPR013083 -
Vian6g00289 911 Pfam Transcription factor regulating root and shoot growth via Pin3 836 891 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00289 Vian-Chr6 9303991 9311977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00289 719 901 Major Intrinsic Protein MIP AT1G31880 34.375 1.86e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00289 - - var:108342748 1742.63