Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00283 ATGAAACGCATTCGCGACTCGAGCAAGCACCTAGTGTACCGTGGCATATGGCTAGGCACATTCCCGACGCCGGAGATGGCGGCAAGAGCTCACGACGTGGCCGCCCTCAACATCAAGGGCTCCGCCGCCATTTTGAACTTCCCCCACCTGGCGAACTCCCTCCCACGCCTGGCCTCCCTGGCGGTGCACAACGTTCAGGCGGCGACGAAGGCGGTGCACATGGAGCCATCCTCCCTCTCGTCCTTGGTGTCGGCAATGGACCTGTCCTCTGCCTCAGACAAGTTGACTCAGATAGTTGCACTCCCGTCCTTGGAAAGCACCGATGACGGGTGTGTGGAGTTTGAAAAGAAACTGAGATAA 360 0.5889 MKRIRDSSKHLVYRGIWLGTFPTPEMAARAHDVAALNIKGSAAILNFPHLANSLPRLASLAVHNVQAATKAVHMEPSSLSSLVSAMDLSSASDKLTQIVALPSLESTDDGCVEFEKKLR 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00283 119 Gene3D AP2/ERF domain 2 49 IPR036955 GO:0003700|GO:0006355
Vian6g00283 119 ProSiteProfiles AP2/ERF domain profile. 1 48 IPR001471 GO:0003700|GO:0006355
Vian6g00283 119 SMART rav1_2 3 54 IPR001471 GO:0003700|GO:0006355
Vian6g00283 119 CDD AP2 3 50 IPR001471 GO:0003700|GO:0006355
Vian6g00283 119 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 107 - -
Vian6g00283 119 SUPERFAMILY DNA-binding domain 14 49 IPR016177 GO:0003677
Vian6g00283 119 Pfam AP2 domain 13 40 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00283 Vian-Chr6 9109196 9109615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00283 2 109 AP2-EREBP Transcription Factor Family AT5G11590 52.027 3.18e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vian6g00283 AP2 6.9e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00283 K09286 - gmx:100813069 167.162