Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian6g00282 ATGGCTACCCTTTCTTCGTTCAGTTTTGTACCCTTTTGCATGCTCTTGTTCCTTGTGTGTCTCACTAGTCCTGCTTGTGTTTCTTCACTTCAACTTTCCTTGAGAAGGCAAGCTTCAATCCTTGTTTCCATGAAGCAAGATTTTGGAGCTGCTAACTCTTCTCTCAGAAGCTGGGACATGTCAAACTACTTGTCCCTTTGCAGTTGGTATGGCATTCAGTGTGACCATGACAACAGGTCTGTGGTGTCAATTGACATATCAGATTTGAATGTTTCAGGGTCAGTTTCACCTGTCATCACAGGACTCTTGAGCCTTGTGAGTGTGTCACTCCAGGGAAATGGCTTCTCTGGGGAGTTTCCAAGTGACATTCACAAGCTACCAAGGCTGAGGTTCCTCAACATGTCTGCAAACGTGTTCAGTGGGAATTTGAGTTGGAAATTCTCCCAGCTAAAGGAGCTCCAAGTGGTGGATGCTTATGACAATGCTTTCAATGGGTCACTTCCTCTGGGTGTCACTGATCTCCCAAAGATCAAGCACTTGAACTTTGGAGGGAACTACTTCTCTGGGGAAATCCCTCCAAGCTATGGAAACATGTGGCAGCTCAAGTATCTGTCCCTTGCAGGGAATGATTTGAGAGGATTCATACCAAGTGAGCTTGGGAATCTCACCAACTTGACTCATCTTTTCTTGGGATACTATAATCAGTTTGATGGTGGAATCCCTCCAGAGTTTGGTAAGCTCACCAATTTGGTTCATCTAGACATTGCAAACTGTAGCTTGACAGGTCCGATTCCTGTTGAGTTGGGAAACCTGAAGAAGTTAGACACTCTCTTCTTGCAAACAAATCAGCTGAGTGGTTCGATCCCTCCCCAGCTGGGAAACTTGACTGGATTAAAAGCTCTTGATCTATCATTCAACATGCTCACAGGAGGCATCCCTAATGAGTTCTCAGCCCTTCAAGAGCTTACCCTCTTGAACTTGTTCATAAACAAGCTGCATGGAGAAATTCCTCACTTCATTTCTGAGCTACCAAACTTGGAGACTCTCAAGCTTTGGCAGAACAACTTCACTGGAGTGATTCCTTCTAATCTTGGCCAGAATGGCAGGTTGGTTGAGCTTGATTTGTCAACAAATAAGCTCACTGGTTTGGTGCCAAAATCTCTGTGCCTTGGAAAGAGGCTGAAAATTTTGATCCTGCTCAAGAACTTTCTGTTTGGATCTTTGCCTGAGGATCTTGGTCAATGCCACACACTCCAAAGAGTCCGTTTGGGTCAGAACTACTTAACCGGGCCATTGCCACATGGGTTTCTCTATTTGCCTGAACTTTTACTTGTGGAGCTTCAGAACAATTATCTTAGTGGTGGCTTACCACAATCAACAAGCAGCACACCCTCCAAACTAGCACAGTTGAACCTATCTAACAACCGCTTCTCAGGGTTTCTTCCAGCCTCAATTTCAAATTTTCCAAACTTGCAAATTCTTCTGCTTAGTGAAAACAGACTCTCTGGAGAAATTCCACCAGTTATAGGGAGGTTGAAAAGCATCCTCAAGTTTGATATAAGTGTCAACAACTTTTCAGGTACTATTCCACCCGAGCTAGGTAATTGTGTCTTACTCACCTATTTAGATTTCAGCCAAAACCAGCTATCAGGTCCCATTCCTGTTCAAATTGCTCAAATCCACATATTAAACTATCTCAATGTCTCATGGAACCACCTAAACCAAAGCCTTCCCAAGGAACTTAGGACCATGAAGGGCTTAACTACAGCAGATTTCTCTCACAACAACTTCTCAGGTTCAATACCGGAGGGGGGGCAATTCTCAATCTTTAATTCTACATCGTTTGTGGGTAATCCTCATCTATGTGGTTATGACTCCAAGCCATGCAACCTTTCTTCAACATCTACTCTGGAGTCTCAAGAAAAAAAGAGTGCAAAACATGGGGTGCCTGGAAAGTTCAAGTTCCTTTTTGCATTGGCATTGTTGGGGTGCTCATTGGTGTTTGCAACCTTGGCCATAATCAAAAGTAGAAAGACTAGGAGGCACTCCAATTCATGGAAGTTAACAGCATTCCAGAAGCTGGAGTATGGGAGTGAGGACATCATAAGTTGCATAAAGGAAAGCAATGTCATAGGAAGAGGAGGATCTGGGGTTGTGTACAGAGGAACCATGCCAAATGGAGAGGAAGTGGCAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCATGCAAGATAATGGTGCATCAGAGTGCATGTCTTCCATTGCTGGTTCCTATGGCTATATTGCTCCAGAATATGCATACACATTGAAAGTGGATGAGAAAAGTGATGTTTACAGCTTTGGAGTGGTGCTGCTAGAGCTCATAACAGGGAGAAGACCAGTGGGAAACTTTGGGGAAGATGGATTAGACATTGTTCAATGGATCATGATGCAAACAAATGGGAACAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTACAACACATTCCTTTGACTGAAGCAAAGCAGGTGTTTTTTGTGGCAAAGTTGTGTGTTCATGAACACAGTGTGGAAAGACCAACCATGAGAGAAGTGGTTGAAATGCTTGCACAAGCAAAACAACCAAATACATTTCAGATGCAGTGA 2631 0.4367 MATLSSFSFVPFCMLLFLVCLTSPACVSSLQLSLRRQASILVSMKQDFGAANSSLRSWDMSNYLSLCSWYGIQCDHDNRSVVSIDISDLNVSGSVSPVITGLLSLVSVSLQGNGFSGEFPSDIHKLPRLRFLNMSANVFSGNLSWKFSQLKELQVVDAYDNAFNGSLPLGVTDLPKIKHLNFGGNYFSGEIPPSYGNMWQLKYLSLAGNDLRGFIPSELGNLTNLTHLFLGYYNQFDGGIPPEFGKLTNLVHLDIANCSLTGPIPVELGNLKKLDTLFLQTNQLSGSIPPQLGNLTGLKALDLSFNMLTGGIPNEFSALQELTLLNLFINKLHGEIPHFISELPNLETLKLWQNNFTGVIPSNLGQNGRLVELDLSTNKLTGLVPKSLCLGKRLKILILLKNFLFGSLPEDLGQCHTLQRVRLGQNYLTGPLPHGFLYLPELLLVELQNNYLSGGLPQSTSSTPSKLAQLNLSNNRFSGFLPASISNFPNLQILLLSENRLSGEIPPVIGRLKSILKFDISVNNFSGTIPPELGNCVLLTYLDFSQNQLSGPIPVQIAQIHILNYLNVSWNHLNQSLPKELRTMKGLTTADFSHNNFSGSIPEGGQFSIFNSTSFVGNPHLCGYDSKPCNLSSTSTLESQEKKSAKHGVPGKFKFLFALALLGCSLVFATLAIIKSRKTRRHSNSWKLTAFQKLEYGSEDIISCIKESNVIGRGGSGVVYRGTMPNGEEVAAHVADFGLAKFMQDNGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGNFGEDGLDIVQWIMMQTNGNKEMVMKILDERLQHIPLTEAKQVFFVAKLCVHEHSVERPTMREVVEMLAQAKQPNTFQMQ 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian6g00282 876 ProSiteProfiles Protein kinase domain profile. 527 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00282 876 SUPERFAMILY L domain-like 311 638 - -
Vian6g00282 876 FunFam Uncharacterized protein 34 191 - -
Vian6g00282 876 Pfam Leucine Rich Repeat 467 488 IPR001611 GO:0005515
Vian6g00282 876 Pfam Leucine Rich Repeat 298 319 IPR001611 GO:0005515
Vian6g00282 876 Pfam Leucine Rich Repeat 249 271 IPR001611 GO:0005515
Vian6g00282 876 FunFam Receptor-like protein kinase 2 192 290 - -
Vian6g00282 876 Pfam Protein tyrosine and serine/threonine kinase 731 864 IPR001245 GO:0004672|GO:0006468
Vian6g00282 876 Gene3D Ribonuclease Inhibitor 192 288 IPR032675 -
Vian6g00282 876 SMART serkin_6 637 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian6g00282 876 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 347 633 - -
Vian6g00282 876 Gene3D Ribonuclease Inhibitor 289 356 IPR032675 -
Vian6g00282 876 Gene3D Ribonuclease Inhibitor 357 633 IPR032675 -
Vian6g00282 876 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 200 731 - -
Vian6g00282 876 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Vian6g00282 876 SUPERFAMILY Protein kinase-like (PK-like) 706 869 IPR011009 -
Vian6g00282 876 Gene3D Ribonuclease Inhibitor 34 191 IPR032675 -
Vian6g00282 876 SUPERFAMILY RNI-like 83 405 - -
Vian6g00282 876 Gene3D Transferase(Phosphotransferase) domain 1 705 876 - -
Vian6g00282 876 SMART LRR_typ_2 343 367 IPR003591 -
Vian6g00282 876 SMART LRR_typ_2 368 390 IPR003591 -
Vian6g00282 876 SMART LRR_typ_2 488 512 IPR003591 -
Vian6g00282 876 SMART LRR_typ_2 271 295 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian6g00282 Vian-Chr6 9101536 9105785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian6g00282 732 866 Receptor kinase-like Gene Family AT5G65700 73.333 8.83e-59 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian6g00282 PK_Tyr_Ser-Thr 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian6g00282 - - gmx:100803075 1287.32